Metamenu

Effective results for Idiomarina loihiensis L2TR (eggnog40)

Summary

Number of putative secreted proteins: 27
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 27 proteins (0 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
283942.IL0589(PF13582)ER
283942.IL0718(PF00930)ER
283942.IL0517(PF00930)ER
283942.IL0039(PF00930)ER
283942.IL1027(PF00930)ER
283942.IL2336(PF16187)ER
283942.IL2328(PF00930)(ER)
283942.IL2170.1(PF02371)
283942.IL1198(PF09811)
283942.IL0587.1(PF02371)
283942.IL0498.1(PF02371)
283942.IL2563.1(PF02371)
283942.IL2463.1(PF02371)
283942.IL0472.1(PF02371)
283942.IL0619.1(PF02371)
283942.IL1662.1(PF02371)
283942.IL1774.1(PF02371)
283942.IL0508.1(PF02371)
283942.IL0573.1(PF02371)
283942.IL2271.1(PF02371)
283942.IL0991(PF16187)
283942.IL2426.1(PF02371)
283942.IL0829(PF09295)
283942.IL1784.1(PF02371)
283942.IL2413(PF10013)not used
283942.IL2073(PF13271)
283942.IL2087(PF13271)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================