Effective results for Caldanaerobacter subterraneus subsp. tengcongensis MB4 (eggnog40)

Summary

Number of putative secreted proteins: 68
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 68 proteins (36 high, 32 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
273068.TTE1173				(PF03572) PF14684	ER
273068.TTE0406				(PF03572) PF14684	ER
273068.TTE2355				(PF03572) PF14684	ER
273068.TTE2356				(PF03572) PF14684	ER
273068.TTE2350				(PF03572) PF14684	ER
273068.TTE0853				PF00730 PF02371	(ER); (mitochondrial)
273068.TTE2745				(PF03572) PF14684	ER
273068.TTE1974				(PF03572)	ER
273068.TTE2617				(PF03572)	ER
273068.TTE2470				(PF01171)	(mitochondrial)
273068.TTE0422				PF02371	(mitochondrial)
273068.TTE0659				(PF06662)	mitochondrial
273068.TTE1151				PF00730 PF02371
273068.TTE1170				PF00730 PF02371
273068.TTE1227				PF00730 PF02371
273068.TTE0013				PF00730 PF02371
273068.TTE0333				PF00730 PF02371
273068.TTE2638				PF00730 PF02371
273068.TTE0357				PF00730 PF02371
273068.TTE1169				(PF03572) PF14684
273068.TTE0347				PF00730 PF02371
273068.TTE0944				PF00730 PF02371
273068.TTE0414				PF00730 PF02371
273068.TTE0710				(PF01909)	(mitochondrial)
273068.TTE1675				PF00730 PF02371
273068.TTE1054				PF00730 PF02371
273068.TTE2016				PF00730 PF02371
273068.TTE0670				PF02371	plastid
273068.TTE1104				PF02371	(plastid)
273068.TTE0450				(PF02971) (PF07837)
273068.TTE1030				PF00730 PF02371
273068.TTE0235				PF00730 PF02371
273068.TTE0312				PF02371
273068.TTE1209				(PF17147)
273068.TTE2794				(PF02527)
273068.TTE0787				(PF12862)
273068.TTE0961				(PF17147)
273068.TTE1819				(PF07085)
273068.TTE1786				PF02371
273068.TTE2141				(PF01909)
273068.TTE2433				PF02099
273068.TTE0153				PF02371
273068.TTE1171				PF02371
273068.TTE1172				(PF03572)
273068.TTE0574				PF00730
273068.TTE1957				(PF01909)
273068.TTE1769				PF00730
273068.TTE1988				(PF01909)
273068.TTE0751				(PF01909)
273068.TTE2198				(PF17147)
273068.TTE2447				(PF07085)
273068.TTE2448				PF06888
273068.TTE1527				(PF01171)
273068.TTE1340				(PF17147)
273068.TTE1260				(PF09419)
273068.TTE0244				(PF01909)
273068.TTE0712				(PF01909)
273068.TTE1046				PF02371
273068.TTE2395				(PF01171)
273068.TTE0885				(PF07085)
273068.TTE0888				(PF07085)
273068.TTE1111				(PF02527)
273068.TTE2517				(PF01909)
273068.TTE0239				PF02371
273068.TTE0073				(PF01171)
273068.TTE0325				(PF01909)
273068.TTE0445				(PF17147)
273068.TTE1541				(PF01909)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================