Effective results for Rhodospirillum rubrum ATCC 11170 (eggnog40)

Summary

Number of putative secreted proteins: 57
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 57 proteins (5 high, 52 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
269796.Rru_A0866				PF13000	ER
269796.Rru_A0848				PF13000	ER
269796.Rru_A2285				(PF00148)	mitochondrial; (mitochondrial)
269796.Rru_A0618				(PF03209)	mitochondrial
269796.Rru_A0857				(PF00685)	mitochondrial; (mitochondrial)
269796.Rru_A0628				(PF03209)	ER
269796.Rru_A1278				(PF00685)	(mitochondrial)
269796.Rru_A1477				(PF05711)	mitochondrial; (mitochondrial)
269796.Rru_A1463				(PF00685)	(mitochondrial)
269796.Rru_A3591				(PF13578)	mitochondrial
269796.Rru_A0147				PF13000	(mitochondrial)
269796.Rru_A1960				(PF13578)	ER
269796.Rru_A1566				(PF06455)	ER
269796.Rru_A0230				(PF00733) (PF13537)
269796.Rru_A3121				(PF00733) (PF13537)
269796.Rru_A0855				(PF00733) (PF13537)
269796.Rru_A0854				(PF00685)	(plastid)
269796.Rru_A3028				(PF00733) (PF13537)
269796.Rru_A2978				(PF00148)	(ER)
269796.Rru_A1989				(PF00733) (PF13537)
269796.Rru_A1460				(PF00733) (PF13537)
269796.Rru_A0819				(PF00733) (PF13537)
269796.Rru_A0794				(PF00148)	(plastid)
269796.Rru_A2937				(PF00733) (PF13537)
269796.Rru_A1483				(PF00733) (PF13537)
269796.Rru_A0832				(PF01930)
269796.Rru_A0404				(PF13537)
269796.Rru_A0383				(PF07653)
269796.Rru_A1392				(PF00148)
269796.Rru_A0262				(PF11563)
269796.Rru_A0286				(PF09825)
269796.Rru_A0773				(PF00148)
269796.Rru_A2351				(PF05711)
269796.Rru_A2286				(PF00148)
269796.Rru_A2343				(PF01930)
269796.Rru_A2349				(PF13578)
269796.Rru_A0622				(PF00148)
269796.Rru_A0623				(PF00148)
269796.Rru_A3027				(PF00685)
269796.Rru_A2979				(PF00148)
269796.Rru_A1279				(PF00733)
269796.Rru_A0837				(PF16095)
269796.Rru_A0120				(PF11563)
269796.Rru_A3567				(PF09731)
269796.Rru_A2745				(PF13578)
269796.Rru_A0772				(PF00148)
269796.Rru_A3241				(PF11563)
269796.Rru_A1394				(PF00148)
269796.Rru_A0810				PF11523
269796.Rru_A1443				(PF13578)
269796.Rru_A0793				(PF00148)
269796.Rru_A0179				(PF01930)
269796.Rru_A1012				(PF00148)
269796.Rru_A1011				(PF00148)
269796.Rru_A3309				(PF00685)
269796.Rru_A1177				(PF11563)
269796.Rru_A0510				PF11523

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================