Metamenu

Effective results for Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 (eggnog40)

Summary

Number of putative secreted proteins: 143
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 33 eukaryotic-like domains, contained in 143 proteins (20 high, 123 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
267671.LIC11098(PF12799) (PF13855)(ER)
267671.LIC11505(PF13855) (PF00560)ER
267671.LIC11504(PF13855) (PF00560)(mitochondrial)
267671.LIC12899(PF12799) (PF13855)ER
267671.LIC12366(PF03062)ER
267671.LIC12145(PF01041)ER
267671.LIC12030(PF07819)ER
267671.LIC11097(PF13855)(mitochondrial)
267671.LIC11224(PF07787)mitochondrial; (mitochondrial)
267671.LIC11399(PF01551)ER
267671.LIC10373PF06739ER
267671.LIC10371PF06739ER
267671.LIC12265(PF01551)ER
267671.LIC11507(PF13855)ER
267671.LIC12988(PF07819)ER
267671.LIC12673PF10520(ER)
267671.LIC10828(PF13855)ER
267671.LIC12512(PF13855)ER
267671.LIC20269(PF03062)(ER)
267671.LIC20262(PF08570)ER
267671.LIC12896(PF01551)(mitochondrial)
267671.LIC12099PF06739ER
267671.LIC12256(PF01551)(ER)
267671.LIC13306(PF02493)ER
267671.LIC11226(PF08570)ER
267671.LIC12401(PF13855)ER
267671.LIC13318PF16073(mitochondrial)
267671.LIC11032(PF02371)(mitochondrial)
267671.LIC10325(PF13174)ER
267671.LIC10493(PF13174)ER; (ER)
267671.LIC11794(PF03062)ER
267671.LIC11248(PF03062)ER
267671.LIC10868PF06739ER
267671.LIC20164(PF03062)ER
267671.LIC20166(PF03062)ER
267671.LIC13066PF06739ER
267671.LIC12209PF06739ER
267671.LIC12208PF06739ER
267671.LIC12759(PF13855)ER
267671.LIC10302(PF13174)ER
267671.LIC11475(PF03062)ER
267671.LIC10271(PF01551)ER
267671.LIC10239PF06739ER
267671.LIC10347PF01731(ER); ER
267671.LIC11463(PF07819)ER
267671.LIC10830(PF13855)(ER)
267671.LIC10831(PF12799) (PF13855)(ER)
267671.LIC10721(PF01551)ER; (ER)
267671.LIC13365(PF01551)ER; (ER)
267671.LIC11830PF14956(mitochondrial)
267671.LIC10224(PF01551)ER
267671.LIC12375(PF13855)mitochondrial
267671.LIC10716(PF15071)ER
267671.LIC11983(PF02493)(plastid)
267671.LIC12563(PF07479) (PF01210)
267671.LIC13145(PF07479) (PF01210)
267671.LIC11149(PF01551)(mitochondrial)
267671.LIC10550(PF01740)(plastid)
267671.LIC12722(PF02371)(mitochondrial)
267671.LIC11051PF05406 (PF13855)
267671.LIC11180(PF13855) (PF00560)
267671.LIC10829(PF12799) (PF13855)
267671.LIC13114(PF02371)(mitochondrial)
267671.LIC10240PF06739(plastid)
267671.LIC13412(PF07479) (PF01210)
267671.LIC12901PF05406 (PF13855)
267671.LIC11064(PF01551)(mitochondrial)
267671.LIC12485(PF13911)
267671.LIC12622(PF01551)
267671.LIC12621(PF04519)
267671.LIC12398(PF01740)
267671.LIC12492(PF03062)
267671.LIC10742(PF02371)
267671.LIC12630(PF13174)
267671.LIC11048PF05406
267671.LIC10953(PF02493)
267671.LIC13103(PF01740)
267671.LIC12821(PF04519)
267671.LIC10607(PF01041)
267671.LIC13067(PF02371)
267671.LIC11568(PF01551)
267671.LIC11400(PF03102)
267671.LIC10570(PF01740)
267671.LIC13482(PF01551)
267671.LIC13483(PF04519)
267671.LIC10626(PF01740)
267671.LIC12197(PF01041)
267671.LIC12198(PF01041)
267671.LIC20061(PF13174)
267671.LIC13031(PF01041)
267671.LIC13453(PF01551)
267671.LIC12187(PF01041)
267671.LIC12676PF05406
267671.LIC12677PF05406
267671.LIC12070(PF01740)
267671.LIC11516(PF01740)
267671.LIC10135(PF00856)
267671.LIC13028(PF10974)
267671.LIC13118(PF01041)
267671.LIC10344(PF01740)
267671.LIC20048(PF01740)
267671.LIC10656(PF02371)
267671.LIC10489(PF02493)
267671.LIC13319(PF11074)
267671.LIC12130(PF01041)
267671.LIC13095(PF13174)
267671.LIC12787(PF01740)
267671.LIC12234(PF13855)
267671.LIC11025(PF01740)
267671.LIC10864PF10373
267671.LIC10265(PF02371)
267671.LIC13063(PF02371)
267671.LIC13065(PF10974)
267671.LIC11801(PF01740)
267671.LIC12937(PF01740)
267671.LIC11308(PF04768)
267671.LIC10300(PF01740)
267671.LIC11471(PF02371)
267671.LIC10690PF05406
267671.LIC10848(PF04519)
267671.LIC11008(PF01551)
267671.LIC11004(PF01740)
267671.LIC20108(PF01740)
267671.LIC12173(PF03102)
267671.LIC12175(PF01041)
267671.LIC11670(PF13431)
267671.LIC13181(PF00856)
267671.LIC10431(PF01195)
267671.LIC12766(PF01740)
267671.LIC13361(PF13600)
267671.LIC13360(PF13600)
267671.LIC13161(PF02371)
267671.LIC12168(PF01041)
267671.LIC12169(PF03102)
267671.LIC12012(PF01740)
267671.LIC11448(PF02371)
267671.LIC13283(PF01551)
267671.LIC11598(PF01195)
267671.LIC11067(PF04519)
267671.LIC10887(PF02371)
267671.LIC10886(PF02371)
267671.LIC10405(PF13431)
267671.LIC12974(PF00856)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================