Effective results for Ralstonia solanacearum GMI1000 (eggnog40)
Summary
Number of putative secreted proteins: 492
- Predicted by EffectiveT3: 141 (high confidence), 224 (low confidence)
- Predicted by EffectiveCCBD: 15 within, 8 before, 30 behind expected region 25..70aa
- Predicted by T4SEpre: 68
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 35 proteins (3 high, 32 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), Type IV, (Type VI)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
267608.RSc0337 | PF12143 PF12142 | mitochondrial | |||
267608.RSc2440 | + | (ER) | |||
267608.RSc1259 | + | ER | |||
267608.RSc1492 | (PF13276) | (mitochondrial) | |||
267608.RSc0805 | + | (mitochondrial); plastid | |||
267608.RSc2405 | (PF13276) | (mitochondrial) | |||
267608.RSc2408 | (PF13276) | mitochondrial | |||
267608.RSc2530 | + | mitochondrial | |||
267608.RSc1910 | + | (mitochondrial) | |||
267608.RSc0495 | + | (mitochondrial) | |||
267608.RSc2511 | + | ER | |||
267608.RSc3350 | + | ER | |||
267608.RSc0586 | + | ER | |||
267608.RSc1436 | (PF13276) | mitochondrial | |||
267608.RSc0664 | + | ER | |||
267608.RSc1085 | (>) | (mitochondrial) | |||
267608.RSc3376 | (>) | (mitochondrial) | |||
267608.RSc3390 | + | ER | |||
267608.RSc0610 | + | ER | |||
267608.RSc0949 | (>) | ER; (ER) | |||
267608.RSc1702 | (<) | ER | |||
267608.RSc2143 | + | (mitochondrial); plastid | |||
267608.RSc3382 | (>) | ER | |||
267608.RSc3034 | (>) | (mitochondrial) | |||
267608.RSc0423 | (PF13276) | mitochondrial | |||
267608.RSc1555 | + | (mitochondrial) | |||
267608.RSc1778 | + | mitochondrial; (mitochondrial) | |||
267608.RSc2391 | (>) | (mitochondrial); mitochondrial | |||
267608.RSc0638 | + | mitochondrial | |||
267608.RSc2958 | + | ER | |||
267608.RSc2135 | + | mitochondrial | |||
267608.RSc1624 | + | mitochondrial | |||
267608.RSc3264 | + | ER | |||
267608.RSc2328 | + | ER; (ER) | |||
267608.RSc0106 | + | ER | |||
267608.RSc2926 | + | (mitochondrial) | |||
267608.RSc0147 | + | ER | |||
267608.RSc2819 | (>) | mitochondrial | |||
267608.RSc0516 | (>) | (mitochondrial); (plastid) | |||
267608.RSc2936 | + | ER | |||
267608.RSc1647 | + | ER | |||
267608.RSc2029 | + | (mitochondrial) | |||
267608.RSc3083 | + | ER | |||
267608.RSc3089 | (PF13276) | mitochondrial | |||
267608.RSc3249 | + | ER | |||
267608.RSc1830 | + | (PF13276) | (mitochondrial) | ||
267608.RSc1655 | + | mitochondrial; (mitochondrial) | |||
267608.RSc2305 | (>) | (ER) | |||
267608.RSc1031 | (>) | ER; (ER) | |||
267608.RSc0736 | + | ER | |||
267608.RSc0828 | (PF13276) | (mitochondrial) | |||
267608.RSc2265 | (PF13276) | mitochondrial; (mitochondrial) | |||
267608.RSc2484 | (+) | + | mitochondrial; plastid | ||
267608.RSc1475 | + | (>) | |||
267608.RSc1260 | + | plastid | |||
267608.RSc2882 | (<) | ||||
267608.RSc2331 | + | (PF13276) | |||
267608.RSc0232 | + | ||||
267608.RSc2358 | + | (mitochondrial) | |||
267608.RSc2995 | + | (mitochondrial) | |||
267608.RSc3355 | + | (plastid) | |||
267608.RSc2741 | (>) | (mitochondrial) | |||
267608.RSc1439 | (PF13276) | (ER) | |||
267608.RSc1721 | + | + | |||
267608.RSc2182 | (+) | mitochondrial | |||
267608.RSc2161 | + | plastid | |||
267608.RSc3013 | (+) | mitochondrial; (mitochondrial) | |||
267608.RSc0666 | + | (plastid) | |||
267608.RSc0060 | + | (ER) | |||
267608.RSc0119 | (+) | (mitochondrial); plastid | |||
267608.RSc0547 | + | (plastid) | |||
267608.RSc0942 | + | (plastid) | |||
267608.RSc1175 | + | (plastid) | |||
267608.RSc0958 | (+) | ER | |||
267608.RSc0723 | + | (ER) | |||
267608.RSc1779 | (>) | (ER) | |||
267608.RSc2390 | + | (plastid) | |||
267608.RSc2555 | (+) | + | (plastid) | ||
267608.RSc0898 | (+) | mitochondrial | |||
267608.RSc1385 | PF01607 | (ER) | |||
267608.RSc2014 | (+) | (mitochondrial); (plastid) | |||
267608.RSc2011 | + | (plastid) | |||
267608.RSc2706 | (PF13276) | (ER) | |||
267608.RSc0889 | + | (>) | |||
267608.RSc1599 | + | (mitochondrial) | |||
267608.RSc2826 | (+) | (mitochondrial) | |||
267608.RSc1293 | + | + | |||
267608.RSc1297 | (+) | mitochondrial | |||
267608.RSc1749 | (>) | (plastid) | |||
267608.RSc2107 | + | PF07938 | |||
267608.RSc2102 | + | (mitochondrial) | |||
267608.RSc2583 | (+) | (mitochondrial) | |||
267608.RSc3077 | + | + | |||
267608.RSc2445 | (+) | (mitochondrial); (plastid) | |||
267608.RSc1641 | + | (plastid) | |||
267608.RSc2200 | + | (plastid) | |||
267608.RSc0409 | + | (plastid) | |||
267608.RSc0732 | (>) | (ER) | |||
267608.RSc0230 | (+) | (mitochondrial) | |||
267608.RSc2055 | (+) | ER | |||
267608.RSc1936 | (+) | (mitochondrial) | |||
267608.RSc0688 | + | (>) | |||
267608.RSc0227 | + | + | |||
267608.RSc0826 | (+) | mitochondrial | |||
267608.RSc3318 | (<) | + | |||
267608.RSc0321 | + | mitochondrial | |||
267608.RSc1251 | + | ||||
267608.RSc1250 | + | ||||
267608.RSc1621 | + | ||||
267608.RSc0257 | + | ||||
267608.RSc1495 | (+) | (mitochondrial) | |||
267608.RSc1473 | + | ||||
267608.RSc2073 | (>) | ||||
267608.RSc1786 | (+) | (plastid) | |||
267608.RSc1798 | (>) | ||||
267608.RSc3232 | (PF13392) | ||||
267608.RSc3236 | (PF13392) | ||||
267608.RSc3129 | + | ||||
267608.RSc1860 | + | ||||
267608.RSc1861 | (+) | (ER) | |||
267608.RSc0249 | + | ||||
267608.RSc2661 | + | ||||
267608.RSc2407 | (+) | (mitochondrial) | |||
267608.RSc1442 | + | ||||
267608.RSc2888 | (PF10908) | ||||
267608.RSc1040 | + | ||||
267608.RSc2085 | (+) | (mitochondrial) | |||
267608.RSc2080 | + | ||||
267608.RSc1477 | + | ||||
267608.RSc1870 | + | ||||
267608.RSc2657 | + | ||||
267608.RSc0876 | + | ||||
267608.RSc1691 | (+) | (plastid) | |||
267608.RSc1690 | + | ||||
267608.RSc1698 | + | ||||
267608.RSc2856 | + | ||||
267608.RSc3219 | + | ||||
267608.RSc3210 | + | ||||
267608.RSc3216 | + | ||||
267608.RSc3324 | + | ||||
267608.RSc0480 | + | ||||
267608.RSc1844 | + | ||||
267608.RSc1842 | (PF13565) | ||||
267608.RSc0005 | + | ||||
267608.RSc0260 | + | ||||
267608.RSc0266 | + | ||||
267608.RSc0464 | + | ||||
267608.RSc1512 | + | ||||
267608.RSc0860 | (+) | (<) | |||
267608.RSc1192 | + | ||||
267608.RSc2357 | + | ||||
267608.RSc0071 | + | ||||
267608.RSc0103 | (PF13565) | ||||
267608.RSc0456 | + | ||||
267608.RSc0850 | + | ||||
267608.RSc1187 | + | ||||
267608.RSc2744 | + | ||||
267608.RSc1435 | + | ||||
267608.RSc2639 | + | ||||
267608.RSc2567 | + | ||||
267608.RSc1998 | + | ||||
267608.RSc0466 | + | ||||
267608.RSc2187 | + | ||||
267608.RSc1451 | + | ||||
267608.RSc0066 | + | ||||
267608.RSc2241 | + | ||||
267608.RSc0110 | (PF13565) | ||||
267608.RSc2246 | + | ||||
267608.RSc2756 | + | ||||
267608.RSc2570 | + | ||||
267608.RSc1719 | (+) | plastid | |||
267608.RSc2194 | + | ||||
267608.RSc2199 | + | ||||
267608.RSc2198 | + | ||||
267608.RSc2176 | (PF13565) | ||||
267608.RSc2282 | + | ||||
267608.RSc3159 | + | ||||
267608.RSc3151 | + | ||||
267608.RSc3395 | (+) | (ER) | |||
267608.RSc3393 | (PF13565) | ||||
267608.RSc2059 | (>) | ||||
267608.RSc1894 | (>) | ||||
267608.RSc2767 | + | ||||
267608.RSc2852 | + | ||||
267608.RSc2962 | + | ||||
267608.RSc2613 | (<) | ||||
267608.RSc2388 | (PF10908) | ||||
267608.RSc0240 | (+) | (ER) | |||
267608.RSc3362 | (+) | (mitochondrial) | |||
267608.RSc2549 | + | ||||
267608.RSc2356 | + | ||||
267608.RSc3039 | + | ||||
267608.RSc0602 | + | ||||
267608.RSc0042 | + | ||||
267608.RSc1959 | (+) | + | |||
267608.RSc0428 | + | ||||
267608.RSc1394 | + | ||||
267608.RSc1395 | + | ||||
267608.RSc1392 | (+) | (ER) | |||
267608.RSc1687 | + | ||||
267608.RSc1770 | + | ||||
267608.RSc2775 | + | ||||
267608.RSc2772 | + | ||||
267608.RSc2155 | + | ||||
267608.RSc2158 | + | ||||
267608.RSc2805 | + | ||||
267608.RSc2804 | + | ||||
267608.RSc0637 | (PF13565) | ||||
267608.RSc0631 | + | ||||
267608.RSc0639 | + | ||||
267608.RSc1943 | + | ||||
267608.RSc1942 | (PF05990) | ||||
267608.RSc2535 | + | ||||
267608.RSc0389 | + | ||||
267608.RSc0387 | (+) | (ER) | |||
267608.RSc0896 | + | ||||
267608.RSc1382 | + | ||||
267608.RSc1384 | (<) | ||||
267608.RSc0960 | (PF05990) | ||||
267608.RSc1549 | (PF13276) | ||||
267608.RSc1542 | + | ||||
267608.RSc2831 | + | ||||
267608.RSc2232 | + | ||||
267608.RSc0548 | + | ||||
267608.RSc0625 | + | ||||
267608.RSc1790 | (+) | (plastid) | |||
267608.RSc1797 | + | ||||
267608.RSc1060 | (>) | ||||
267608.RSc1379 | + | ||||
267608.RSc0575 | + | ||||
267608.RSc0571 | (>) | ||||
267608.RSc0578 | (PF13276) | ||||
267608.RSc1281 | + | ||||
267608.RSc1598 | + | ||||
267608.RSc2481 | + | ||||
267608.RSc2480 | (<) | not used | |||
267608.RSc2485 | + | ||||
267608.RSc2965 | + | ||||
267608.RSc3440 | + | ||||
267608.RSc1629 | + | ||||
267608.RSc2139 | + | ||||
267608.RSc1627 | + | ||||
267608.RSc3193 | (PF13392) | ||||
267608.RSc2225 | + | ||||
267608.RSc1997 | + | ||||
267608.RSc2223 | + | ||||
267608.RSc1551 | + | ||||
267608.RSc3284 | + | ||||
267608.RSc3069 | + | ||||
267608.RSc0760 | + | ||||
267608.RSc0367 | + | ||||
267608.RSc0365 | (>) | ||||
267608.RSc1298 | + | ||||
267608.RSc2928 | + | ||||
267608.RSc2104 | + | ||||
267608.RSc2101 | + | ||||
267608.RSc1631 | + | ||||
267608.RSc1639 | + | ||||
267608.RSc2938 | (+) | (mitochondrial) | |||
267608.RSc2540 | + | ||||
267608.RSc1916 | (+) | plastid | |||
267608.RSc0374 | + | ||||
267608.RSc0372 | + | ||||
267608.RSc1353 | + | ||||
267608.RSc1356 | + | ||||
267608.RSc1357 | (PF00646) | ||||
267608.RSc0193 | (>) | ||||
267608.RSc1822 | + | ||||
267608.RSc0200 | + | ||||
267608.RSc1008 | (+) | (mitochondrial) | |||
267608.RSc1003 | + | ||||
267608.RSc2735 | + | ||||
267608.RSc2448 | + | ||||
267608.RSc1640 | (+) | (plastid) | |||
267608.RSc0155 | + | ||||
267608.RSc0742 | + | ||||
267608.RSc1907 | (+) | (>) | |||
267608.RSc2909 | + | ||||
267608.RSc1019 | (+) | (>) | |||
267608.RSc1129 | + | ||||
267608.RSc1304 | + | ||||
267608.RSc3095 | + | ||||
267608.RSc0758 | + | ||||
267608.RSc1935 | + | ||||
267608.RSc0356 | + | ||||
267608.RSc0687 | + | ||||
267608.RSc1242 | + | ||||
267608.RSc2914 | + | ||||
267608.RSc0226 | (PF05189) | ||||
267608.RSc0220 | (+) | + | |||
267608.RSc0827 | (PF05990) | ||||
267608.RSc0821 | + | ||||
267608.RSc1487 | + | ||||
267608.RSc1027 | + | ||||
267608.RSc1662 | + | ||||
267608.RSc2267 | (PF13276) | ||||
267608.RSc2319 | + | ||||
267608.RSc2317 | + | ||||
267608.RSc2313 | (PF13276) | not used | |||
267608.RSc1919 | + | ||||
267608.RSc3139 | (>) | ||||
267608.RSc3135 | + | ||||
267608.RSc0225 | + | ||||
267608.RSc1920 | + | ||||
267608.RSc0322 | + | ||||
267608.RSc0031 | + | ||||
267608.RSc2545 | (+) | ||||
267608.RSc1322 | (+) | ||||
267608.RSc1079 | (+) | ||||
267608.RSc2412 | (+) | ||||
267608.RSc2413 | (+) | ||||
267608.RSc1676 | (+) | ||||
267608.RSc2897 | (+) | ||||
267608.RSc2077 | (+) | ||||
267608.RSc3234 | (+) | ||||
267608.RSc2323 | (+) | ||||
267608.RSc2324 | (+) | ||||
267608.RSc3126 | (+) | ||||
267608.RSc2224 | (+) | ||||
267608.RSc0333 | (+) | ||||
267608.RSc1866 | (+) | ||||
267608.RSc0029 | (+) | ||||
267608.RSc0028 | (+) | ||||
267608.RSc1311 | (+) | ||||
267608.RSc0248 | (+) | ||||
267608.RSc2662 | (+) | ||||
267608.RSc2402 | (+) | ||||
267608.RSc2081 | (+) | ||||
267608.RSc2334 | (+) | ||||
267608.RSc2332 | (+) | ||||
267608.RSc3111 | (+) | ||||
267608.RSc3114 | (+) | ||||
267608.RSc0235 | (+) | ||||
267608.RSc0474 | (+) | ||||
267608.RSc2650 | (+) | ||||
267608.RSc2656 | (+) | ||||
267608.RSc2658 | (+) | ||||
267608.RSc1276 | (+) | ||||
267608.RSc1692 | (+) | ||||
267608.RSc1457 | (+) | ||||
267608.RSc1456 | (+) | ||||
267608.RSc1533 | (+) | ||||
267608.RSc1453 | (+) | ||||
267608.RSc2502 | (+) | ||||
267608.RSc3213 | (+) | ||||
267608.RSc3326 | (+) | ||||
267608.RSc0482 | (+) | ||||
267608.RSc0484 | (+) | ||||
267608.RSc0317 | (+) | ||||
267608.RSc0434 | (+) | ||||
267608.RSc1991 | (+) | ||||
267608.RSc0868 | (+) | ||||
267608.RSc1199 | (+) | ||||
267608.RSc1202 | (+) | ||||
267608.RSc1207 | (+) | ||||
267608.RSc2421 | (+) | ||||
267608.RSc2352 | (+) | ||||
267608.RSc3174 | (+) | ||||
267608.RSc0588 | (+) | ||||
267608.RSc0079 | (+) | ||||
267608.RSc0457 | (+) | ||||
267608.RSc1505 | (+) | ||||
267608.RSc1433 | (+) | ||||
267608.RSc2638 | (+) | ||||
267608.RSc2630 | (+) | ||||
267608.RSc1728 | (+) | ||||
267608.RSc2188 | (+) | ||||
267608.RSc1106 | (+) | ||||
267608.RSc3349 | (+) | ||||
267608.RSc3163 | (+) | ||||
267608.RSc0665 | (+) | ||||
267608.RSc0597 | (+) | ||||
267608.RSc0064 | (+) | ||||
267608.RSc1536 | (+) | ||||
267608.RSc1538 | (+) | ||||
267608.RSc0841 | (+) | ||||
267608.RSc1748 | (+) | ||||
267608.RSc1226 | (+) | ||||
267608.RSc1221 | (+) | ||||
267608.RSc1883 | (+) | ||||
267608.RSc1228 | (+) | ||||
267608.RSc2759 | (+) | ||||
267608.RSc2623 | (+) | ||||
267608.RSc2577 | (+) | ||||
267608.RSc1718 | (+) | ||||
267608.RSc3371 | (+) | ||||
267608.RSc2286 | (+) | ||||
267608.RSc3399 | (+) | ||||
267608.RSc0619 | (+) | ||||
267608.RSc0791 | (+) | ||||
267608.RSc0053 | (+) | ||||
267608.RSc0439 | (+) | ||||
267608.RSc0540 | (+) | ||||
267608.RSc1419 | (+) | ||||
267608.RSc2763 | (+) | ||||
267608.RSc1099 | (+) | ||||
267608.RSc1705 | (+) | ||||
267608.RSc1388 | (+) | ||||
267608.RSc2386 | (+) | ||||
267608.RSc0242 | (+) | ||||
267608.RSc2544 | (+) | ||||
267608.RSc3148 | + | ||||
267608.RSc3367 | (+) | ||||
267608.RSc0043 | (+) | ||||
267608.RSc0041 | (+) | ||||
267608.RSc0048 | (+) | ||||
267608.RSc0135 | (+) | ||||
267608.RSc0134 | (+) | ||||
267608.RSc0425 | (+) | ||||
267608.RSc1393 | (+) | ||||
267608.RSc0555 | (+) | ||||
267608.RSc0950 | (+) | ||||
267608.RSc0952 | (+) | ||||
267608.RSc2600 | (+) | ||||
267608.RSc2609 | (+) | ||||
267608.RSc1772 | (+) | ||||
267608.RSc2153 | (+) | ||||
267608.RSc2556 | (+) | ||||
267608.RSc1441 | (+) | ||||
267608.RSc0635 | (+) | ||||
267608.RSc2069 | (+) | ||||
267608.RSc0703 | (+) | ||||
267608.RSc1945 | (+) | not used | |||
267608.RSc1941 | (+) | ||||
267608.RSc0143 | (+) | ||||
267608.RSc0412 | (+) | ||||
267608.RSc0890 | (+) | ||||
267608.RSc0895 | (+) | ||||
267608.RSc0566 | (+) | ||||
267608.RSc0964 | (+) | ||||
267608.RSc1543 | (+) | ||||
267608.RSc1544 | (+) | ||||
267608.RSc2702 | (+) | not used | |||
267608.RSc2700 | (+) | ||||
267608.RSc2705 | (+) | ||||
267608.RSc2122 | (+) | not used | |||
267608.RSc2120 | (+) | ||||
267608.RSc3059 | (+) | ||||
267608.RSc1238 | (+) | ||||
267608.RSc0082 | (+) | ||||
267608.RSc0089 | (+) | ||||
267608.RSc1975 | (+) | ||||
267608.RSc1372 | (+) | ||||
267608.RSc0824 | (+) | ||||
267608.RSc0572 | (+) | ||||
267608.RSc1028 | (+) | ||||
267608.RSc1595 | (+) | ||||
267608.RSc1858 | (+) | ||||
267608.RSc2615 | (+) | ||||
267608.RSc3442 | (+) | ||||
267608.RSc2226 | (+) | ||||
267608.RSc2220 | (+) | ||||
267608.RSc0224 | (+) | ||||
267608.RSc0364 | (+) | not used | |||
267608.RSc0363 | (+) | ||||
267608.RSc0985 | (+) | ||||
267608.RSc2037 | (+) | ||||
267608.RSc2584 | (+) | ||||
267608.RSc2211 | (+) | ||||
267608.RSc3278 | (+) | ||||
267608.RSc0779 | (+) | ||||
267608.RSc0770 | (+) | ||||
267608.RSc0172 | (+) | ||||
267608.RSc1359 | (+) | ||||
267608.RSc0190 | (+) | ||||
267608.RSc0998 | (+) | ||||
267608.RSc1004 | (+) | ||||
267608.RSc1007 | (+) | ||||
267608.RSc2117 | (+) | ||||
267608.RSc1836 | (+) | ||||
267608.RSc2905 | (+) | ||||
267608.RSc1349 | (+) | ||||
267608.RSc2876 | (+) | ||||
267608.RSc1037 | (+) | ||||
267608.RSc0753 | (+) | ||||
267608.RSc0751 | (+) | ||||
267608.RSc1145 | (+) | ||||
267608.RSc0686 | (+) | ||||
267608.RSc1801 | (+) | ||||
267608.RSc1759 | (+) | ||||
267608.RSc2009 | (+) | ||||
267608.RSc2868 | (+) | ||||
267608.RSc3407 | (+) | ||||
267608.RSc3405 | (+) | ||||
267608.RSc3136 | (+) | ||||
267608.RSc1922 | (+) | ||||
267608.RSc1924 | (+) | ||||
267608.RSc0326 | (+) | ||||
267608.RSc1819 | (+) | ||||
267608.RSc1815 | (+) | ||||
267608.RSc1812 | (+) | ||||
267608.RSc0784 | (+) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
- EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
- EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: YES (FDR = 12.5 %)
Estimated copy number = 0.1 (1/10 KEGG proteins)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.6 (6/10 KEGG proteins)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 0.5 (4/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
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EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.1 (1/10 KEGG proteins)
Estimated copy number = 0.6 (6/10 KEGG proteins)
Estimated copy number = 0.5 (4/8 KEGG proteins)