Metamenu

Effective results for Kineococcus radiotolerans SRS30216 = ATCC BAA-149 (eggnog40)

Summary

Number of putative secreted proteins: 81
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 81 proteins (12 high, 69 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
266940.Krad_0059PF08310(ER); ER
266940.Krad_4168(PF03015)ER
266940.Krad_1679(PF09949)(mitochondrial)
266940.Krad_4257(PF13653)ER
266940.Krad_2701PF08310mitochondrial
266940.Krad_0039PF08310(ER)
266940.Krad_4465(PF13185)(mitochondrial)
266940.Krad_3602(PF13185)(ER)
266940.Krad_2943(PF04229)mitochondrial
266940.Krad_1965PF08310ER; (ER)
266940.Krad_0947(PF13185)mitochondrial
266940.Krad_4298(PF02148)ER
266940.Krad_0967PF08310ER
266940.Krad_0359PF08310(mitochondrial)
266940.Krad_0350(PF13185)ER
266940.Krad_3028PF08310(ER)
266940.Krad_1831(PF03659)mitochondrial
266940.Krad_0831(PF13185)ER
266940.Krad_3877PF08310mitochondrial
266940.Krad_3878PF08310ER
266940.Krad_3879PF08310ER; (ER)
266940.Krad_3521(PF01149) (PF06831)
266940.Krad_2304(PF03807)(plastid)
266940.Krad_1488(PF01149) (PF06831)
266940.Krad_2349(PF04229)(plastid)
266940.Krad_1930(PF13185)(mitochondrial)
266940.Krad_0151(PF01149) (PF06831)
266940.Krad_0158(PF01149) (PF06831)
266940.Krad_1950(PF03807)(mitochondrial)
266940.Krad_3396(PF01149) (PF06831)
266940.Krad_2289(PF03807)(mitochondrial)
266940.Krad_0294(PF01149) (PF06831)
266940.Krad_1377(PF01149) (PF06831)
266940.Krad_1342(PF10013)(plastid)
266940.Krad_2893(PF03807)plastid
266940.Krad_4158(PF13185)
266940.Krad_0498(PF03807)
266940.Krad_3413(PF05448)
266940.Krad_2309(PF03807)
266940.Krad_2300(PF02148)
266940.Krad_0750(PF13185)
266940.Krad_2431(PF13185)
266940.Krad_4213(PF13185)
266940.Krad_2751(PF04229)
266940.Krad_2200(PF13185)
266940.Krad_0459(PF02148)
266940.Krad_2438(PF13185)
266940.Krad_2101(PF09949)
266940.Krad_0207(PF13185)
266940.Krad_4187(PF05448)
266940.Krad_4347(PF13185)
266940.Krad_2006(PF13185)
266940.Krad_2009(PF13185)
266940.Krad_1072PF06905
266940.Krad_0433(PF13185)
266940.Krad_2010(PF13185)
266940.Krad_2571(PF03807)
266940.Krad_0223(PF13185)
266940.Krad_0224(PF13185)
266940.Krad_0401(PF13185)
266940.Krad_2025(PF13185)
266940.Krad_0098(PF13185)
266940.Krad_4080(PF13185)
266940.Krad_4261(PF13185)
266940.Krad_1954(PF02148)
266940.Krad_4477(PF13185)
266940.Krad_0169(PF13185)
266940.Krad_0613PF08213not used
266940.Krad_0610(PF03807)
266940.Krad_3833(PF04229)
266940.Krad_0584(PF05448)
266940.Krad_2459(PF13185)
266940.Krad_2455(PF13185)
266940.Krad_3737(PF13185)
266940.Krad_0642(PF13185)
266940.Krad_0659(PF13185)
266940.Krad_2654(PF03807)
266940.Krad_2096(PF13185)
266940.Krad_4485(PF13185)
266940.Krad_0246(PF13185)
266940.Krad_4493(PF13185)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================