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Genomes encoding eukaryotic-like proteins

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PF03807 NADP oxidoreductase coenzyme F420-dependent

Copy number in non-pathogens:
Mean=2.01 Stddev=1.48

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Rhizobium favelukesii s 4 8
Neorhizobium galegae bv. orientalis str. HAMBI 540 s 4 8
Rhizobium leguminosarum bv. trifolii WSM1325 s 4 8
Kutzneria sp. 744 s 4 8
Frankia sp. CN3 s 5 10
Frankia sp. Cc1.17 s 4 9
Rhizobium favelukesii s 4 8
Rhizobium leguminosarum bv. viciae Vh3 s 4 8
Burkholderia sp. WSM4176 s 4 8
Rhizobium leguminosarum bv. viciae Vc2 s 4 8
Sinorhizobium meliloti RRl128 s 4 8
Rhizobium leguminosarum bv. phaseoli FA23 s 4 8
Frankia discariae s 4 8
Streptomyces sp. HGB0020 s 4 9
Rhizobium leguminosarum bv. trifolii CC283b s 4 8
Agrobacterium radiobacter K84 s 4 8
Sinorhizobium meliloti GR4 s 4 8
Actinoplanes subtropicus s 5 10
Agrobacterium rhizogenes s 5 10
Rhizobium tropici s 4 9
Agrobacterium rhizogenes s 4 8
Agrobacterium rhizogenes s 4 8
Sinorhizobium meliloti s 4 9
Pseudomonas syringae s 4 9
Rhizobium sp. N324 s 4 8
Rhizobium sp. N541 s 4 8
Rhizobium sp. N941 s 4 8
Rhizobium gallicum s 4 9
Sinorhizobium meliloti s 4 9
Sinorhizobium meliloti s 4 8
Streptomyces rhizosphaericus s 4 8
Sinorhizobium meliloti s 6 11
Sinorhizobium meliloti s 4 9
Sinorhizobium medicae WSM419 s 4 8

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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