Effective results for Streptococcus thermophilus LMG 18311 (eggnog40)
Summary
Number of putative secreted proteins: 110
- Predicted by T4SEpre: 75
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 52 proteins (23 high, 29 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
264199.stu1425 | + | mitochondrial | |||
264199.stu2011 | + | (mitochondrial) | |||
264199.stu0636 | + | (ER) | |||
264199.stu0822 | PF01610 | (mitochondrial) | |||
264199.stu0442 | (PF05257) | (mitochondrial); mitochondrial | |||
264199.stu0877 | + | ER | |||
264199.stu0714 | + | ER | |||
264199.stu0659 | + | (ER) | |||
264199.stu0039 | (PF05257) | ER | |||
264199.stu0699 | + | ER | |||
264199.stu1613 | + | ER | |||
264199.stu0022 | (PF05257) | ER | |||
264199.stu0117 | + | ER | |||
264199.stu1087 | PF01610 | mitochondrial; (mitochondrial) | |||
264199.stu1796 | + | ER | |||
264199.stu1780 | PF01610 | (mitochondrial) | |||
264199.stu0230 | + | (mitochondrial) | |||
264199.stu1229 | + | (mitochondrial) | |||
264199.stu1045 | + | PF01610 | |||
264199.stu1124 | + | PF01610 | |||
264199.stu0925 | PF01610 | (mitochondrial) | |||
264199.stu1753 | + | (mitochondrial) | |||
264199.stu1314 | + | ||||
264199.stu0797 | (PF13518) | ||||
264199.stu0796 | (PF13276) | ||||
264199.stu1112 | PF02916 | ||||
264199.stu1222 | + | ||||
264199.stu0149 | + | ||||
264199.stu1303 | PF01610 | ||||
264199.stu1302 | PF01610 | ||||
264199.stu0899 | (PF13518) | ||||
264199.stu1942 | + | ||||
264199.stu1053 | + | ||||
264199.stu0705 | + | ||||
264199.stu1386 | + | ||||
264199.stu0335 | + | ||||
264199.stu1444 | PF01610 | ||||
264199.stu0426 | + | ||||
264199.stu2014 | + | ||||
264199.stu2017 | (PF13936) | ||||
264199.stu0950 | + | ||||
264199.stu0456 | + | ||||
264199.stu1697 | + | ||||
264199.stu2009 | + | ||||
264199.stu0971 | (PF13936) | ||||
264199.stu1677 | (PF13518) | ||||
264199.stu1904 | (PF13936) | not used | |||
264199.stu1909 | + | ||||
264199.stu1678 | (PF13276) | ||||
264199.stu0448 | + | ||||
264199.stu1007 | + | ||||
264199.stu1274 | + | ||||
264199.stu1672 | + | ||||
264199.stu1356 | (PF13518) | ||||
264199.stu1355 | (PF13276) | ||||
264199.stu1874 | + | ||||
264199.stu1452 | (PF13276) | ||||
264199.stu1514 | + | ||||
264199.stu0864 | PF01610 | ||||
264199.stu0863 | PF01610 | ||||
264199.stu1024 | + | ||||
264199.stu0074 | + | ||||
264199.stu0543 | + | ||||
264199.stu0710 | + | ||||
264199.stu0069 | (PF13276) | ||||
264199.stu0398 | PF01610 | ||||
264199.stu0393 | + | ||||
264199.stu0480 | + | ||||
264199.stu0711 | + | ||||
264199.stu0938 | + | ||||
264199.stu0046 | (PF13936) | ||||
264199.stu0018 | (PF13276) | ||||
264199.stu0013 | PF01610 | ||||
264199.stu0014 | PF01610 | ||||
264199.stu0657 | + | ||||
264199.stu1835 | (PF13518) | ||||
264199.stu1834 | (PF13276) | ||||
264199.stu0266 | (PF13936) | ||||
264199.stu0131 | + | ||||
264199.stu0733 | + | ||||
264199.stu0223 | (PF13936) | ||||
264199.stu0093 | + | ||||
264199.stu0439 | + | ||||
264199.stu0037 | (PF13276) | ||||
264199.stu0106 | (PF05257) | ||||
264199.stu0694 | + | ||||
264199.stu0898 | (PF13276) | ||||
264199.stu0743 | PF01610 | ||||
264199.stu0212 | + | ||||
264199.stu1985 | (PF13936) | ||||
264199.stu0368 | + | ||||
264199.stu0369 | + | ||||
264199.stu1986 | + | ||||
264199.stu0025 | PF01610 | ||||
264199.stu0024 | PF01610 | ||||
264199.stu1915 | + | ||||
264199.stu0206 | (PF13276) | ||||
264199.stu1086 | PF01610 | ||||
264199.stu1792 | (PF13936) | ||||
264199.stu0349 | + | ||||
264199.stu0126 | PF01610 | ||||
264199.stu1933 | + | ||||
264199.stu0767 | (PF13276) | ||||
264199.stu0735 | + | ||||
264199.stu1091 | + | ||||
264199.stu1786 | (PF13276) | ||||
264199.stu1781 | PF01610 | not used | |||
264199.stu1415 | PF01610 | not used | |||
264199.stu1414 | PF01610 | ||||
264199.stu0410 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: NO (FDR = 0.5 %)
- Functional Type III secretion system: N.D.
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0 (0/0 KEGG proteins)
- Functional Type VI secretion system: N.D.
Individual results for each secretion system
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0 (0/0 KEGG proteins)