Effective results for Streptococcus thermophilus LMG 18311 (eggnog40)

Summary

Number of putative secreted proteins: 110
- Predicted by T4SEpre: 75
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 52 proteins (23 high, 29 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
264199.stu1425+mitochondrial
264199.stu2011+(mitochondrial)
264199.stu0636+(ER)
264199.stu0822PF01610(mitochondrial)
264199.stu0442(PF05257)(mitochondrial); mitochondrial
264199.stu0877+ER
264199.stu0714+ER
264199.stu0659+(ER)
264199.stu0039(PF05257)ER
264199.stu0699+ER
264199.stu1613+ER
264199.stu0022(PF05257)ER
264199.stu0117+ER
264199.stu1087PF01610mitochondrial; (mitochondrial)
264199.stu1796+ER
264199.stu1780PF01610(mitochondrial)
264199.stu0230+(mitochondrial)
264199.stu1229+(mitochondrial)
264199.stu1045+PF01610
264199.stu1124+PF01610
264199.stu0925PF01610(mitochondrial)
264199.stu1753+(mitochondrial)
264199.stu1314+
264199.stu0797(PF13518)
264199.stu0796(PF13276)
264199.stu1112PF02916
264199.stu1222+
264199.stu0149+
264199.stu1303PF01610
264199.stu1302PF01610
264199.stu0899(PF13518)
264199.stu1942+
264199.stu1053+
264199.stu0705+
264199.stu1386+
264199.stu0335+
264199.stu1444PF01610
264199.stu0426+
264199.stu2014+
264199.stu2017(PF13936)
264199.stu0950+
264199.stu0456+
264199.stu1697+
264199.stu2009+
264199.stu0971(PF13936)
264199.stu1677(PF13518)
264199.stu1904(PF13936)not used
264199.stu1909+
264199.stu1678(PF13276)
264199.stu0448+
264199.stu1007+
264199.stu1274+
264199.stu1672+
264199.stu1356(PF13518)
264199.stu1355(PF13276)
264199.stu1874+
264199.stu1452(PF13276)
264199.stu1514+
264199.stu0864PF01610
264199.stu0863PF01610
264199.stu1024+
264199.stu0074+
264199.stu0543+
264199.stu0710+
264199.stu0069(PF13276)
264199.stu0398PF01610
264199.stu0393+
264199.stu0480+
264199.stu0711+
264199.stu0938+
264199.stu0046(PF13936)
264199.stu0018(PF13276)
264199.stu0013PF01610
264199.stu0014PF01610
264199.stu0657+
264199.stu1835(PF13518)
264199.stu1834(PF13276)
264199.stu0266(PF13936)
264199.stu0131+
264199.stu0733+
264199.stu0223(PF13936)
264199.stu0093+
264199.stu0439+
264199.stu0037(PF13276)
264199.stu0106(PF05257)
264199.stu0694+
264199.stu0898(PF13276)
264199.stu0743PF01610
264199.stu0212+
264199.stu1985(PF13936)
264199.stu0368+
264199.stu0369+
264199.stu1986+
264199.stu0025PF01610
264199.stu0024PF01610
264199.stu1915+
264199.stu0206(PF13276)
264199.stu1086PF01610
264199.stu1792(PF13936)
264199.stu0349+
264199.stu0126PF01610
264199.stu1933+
264199.stu0767(PF13276)
264199.stu0735+
264199.stu1091+
264199.stu1786(PF13276)
264199.stu1781PF01610not used
264199.stu1415PF01610not used
264199.stu1414PF01610
264199.stu0410+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================