Effective results for Alcanivorax sp. DG881 (eggnog40)

Summary

Number of putative secreted proteins: 30
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 30 proteins (1 high, 29 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
236097.ADG881_795				(PF08487)	(mitochondrial); (plastid)
236097.ADG881_1901				(PF13205)	ER; (ER)
236097.ADG881_806				(PF13205)	ER
236097.ADG881_753				(PF13205)	ER; (ER)
236097.ADG881_1030				(PF13205)	(ER)
236097.ADG881_736				(PF03109)	mitochondrial; (mitochondrial)
236097.ADG881_648				(PF03109)	mitochondrial
236097.ADG881_1299				(PF08487)	ER
236097.ADG881_2062				(PF09588)	mitochondrial; (mitochondrial)
236097.ADG881_1376				(PF03388)	ER
236097.ADG881_1565				(PF13205)	ER
236097.ADG881_2261				(PF09588)	mitochondrial; (mitochondrial)
236097.ADG881_1795				(PF13205)	ER
236097.ADG881_3330				(PF09588)	mitochondrial; (mitochondrial)
236097.ADG881_1880				(PF13205)	ER
236097.ADG881_460				(PF01852)	ER
236097.ADG881_309				(PF03109)	ER
236097.ADG881_2969				PF00014	ER
236097.ADG881_2208				(PF01852)	(ER)
236097.ADG881_1483				(PF13205)
236097.ADG881_1253				(PF01852)
236097.ADG881_2133				(PF11815)
236097.ADG881_1529				(PF03109)
236097.ADG881_1501				(PF01709)
236097.ADG881_3299				(PF01947)
236097.ADG881_1548				(PF03109)
236097.ADG881_3141				(PF03109)
236097.ADG881_2444				(PF03109)
236097.ADG881_3377				(PF01709)
236097.ADG881_943				(PF01709)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================