Effective results for Aquifex aeolicus VF5 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 29 proteins (6 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
224324.aq_854				(PF13429)	ER
224324.aq_520				(PF02873)	(mitochondrial)
224324.aq_363				(PF13664)	ER
224324.aq_125				(PF13664)	ER
224324.aq_1402				(PF13429)	ER
224324.aq_841				PF02005
224324.aq_1832				PF00177
224324.aq_1834				(PF00164)
224324.aq_1052				(PF01597)
224324.aq_1306				(PF16114)
224324.aq_1560				(PF00025)
224324.aq_890				(PF01875)
224324.aq_944				(PF01597)
224324.aq_759				PF02996
224324.aq_1108				(PF01597)
224324.aq_1657				(PF01597)
224324.aq_1422				(PF14792)
224324.aq_642				(PF05189)
224324.aq_402				(PF01597)
224324.aq_1292				(PF03266)
224324.aq_2197				(PF07720)
224324.aq_1219				PF04910
224324.aq_459				(PF07998)
224324.aq_199				PF03465
224324.aq_1336				(PF01875)
224324.aq_1447				(PF02171)
224324.aq_511				(PF02873)
224324.aq_735				(PF00164)
224324.aq_734				PF00177

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================