Effective results for Aquifex aeolicus VF5 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 29 proteins (6 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
224324.aq_854(PF13429)ER
224324.aq_520(PF02873)(mitochondrial)
224324.aq_363(PF13664)ER
224324.aq_125(PF13664)ER
224324.aq_1402(PF13429)ER
224324.aq_841PF02005
224324.aq_1832PF00177
224324.aq_1834(PF00164)
224324.aq_1052(PF01597)
224324.aq_1306(PF16114)
224324.aq_1560(PF00025)
224324.aq_890(PF01875)
224324.aq_944(PF01597)
224324.aq_759PF02996
224324.aq_1108(PF01597)
224324.aq_1657(PF01597)
224324.aq_1422(PF14792)
224324.aq_642(PF05189)
224324.aq_402(PF01597)
224324.aq_1292(PF03266)
224324.aq_2197(PF07720)
224324.aq_1219PF04910
224324.aq_459(PF07998)
224324.aq_199PF03465
224324.aq_1336(PF01875)
224324.aq_1447(PF02171)
224324.aq_511(PF02873)
224324.aq_735(PF00164)
224324.aq_734PF00177

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================