Metamenu

Effective results for Micromonospora sp. ATCC 39149 (eggnog40)

Summary

Number of putative secreted proteins: 211
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 42 eukaryotic-like domains, contained in 211 proteins (50 high, 161 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
219305.MCAG_05132(PF14765) (PF16197) (PF00109)(mitochondrial)
219305.MCAG_05314PF03664 (PF00331) (PF14200)(mitochondrial); (plastid)
219305.MCAG_00021(PF00150) PF00553ER
219305.MCAG_05455(PF00331) PF00553(ER)
219305.MCAG_05208PF03664 (PF14200)ER
219305.MCAG_00582(PF14587) (PF14200)ER
219305.MCAG_05196(PF16197) (PF00109)mitochondrial; (mitochondrial)
219305.MCAG_04566(PF00150) PF00553ER
219305.MCAG_04752(PF02018) PF00553ER
219305.MCAG_00708(PF00331) PF00553(ER)
219305.MCAG_02536(PF10503) PF00553ER
219305.MCAG_00660(PF00331) PF00553(mitochondrial); plastid
219305.MCAG_04430(PF00150) PF00553ER
219305.MCAG_04605PF03664 (PF14200)mitochondrial
219305.MCAG_04084(PF01670) PF00553ER
219305.MCAG_03517PF03664 (PF00331) (PF00652)
219305.MCAG_00529(PF00109)mitochondrial; (mitochondrial)
219305.MCAG_01492(PF13529)(mitochondrial)
219305.MCAG_00549(PF00109)(mitochondrial)
219305.MCAG_05062(PF00652)(mitochondrial)
219305.MCAG_05004(PF02796)mitochondrial; (mitochondrial)
219305.MCAG_00228(PF01670) PF00553(mitochondrial)
219305.MCAG_05046PF00553ER
219305.MCAG_01771(PF13385)mitochondrial
219305.MCAG_00801(PF02796)mitochondrial; (mitochondrial)
219305.MCAG_00004(PF08326)(mitochondrial)
219305.MCAG_01250PF00553ER
219305.MCAG_04545(PF00161)(ER)
219305.MCAG_04544PF00553(ER)
219305.MCAG_05142(PF16197)mitochondrial
219305.MCAG_00636(PF00331)mitochondrial; ER
219305.MCAG_05192(PF14765) (PF16197) (PF00109)
219305.MCAG_03387(PF00652)mitochondrial; (mitochondrial)
219305.MCAG_00659PF00553ER
219305.MCAG_05369(PF14765) (PF16197) (PF00109)not used
219305.MCAG_04508(PF00652)ER
219305.MCAG_04502PF00553ER
219305.MCAG_02220(PF13385)ER
219305.MCAG_00671(PF00331)ER
219305.MCAG_00542(PF16197) (PF00109)(plastid)
219305.MCAG_00331PF00553ER
219305.MCAG_01316(PF06772)(mitochondrial)
219305.MCAG_03151(PF13529)ER
219305.MCAG_00757(PF02796)mitochondrial; (mitochondrial)
219305.MCAG_01704PF00553ER
219305.MCAG_00479(PF00150) PF00553(plastid)
219305.MCAG_01149PF00553ER
219305.MCAG_00375(PF00109)(mitochondrial)
219305.MCAG_01352(PF05922)mitochondrial; (mitochondrial)
219305.MCAG_02635PF00553(mitochondrial); mitochondrial
219305.MCAG_05188(PF14765) (PF16197) (PF00109)
219305.MCAG_05537PF00553ER
219305.MCAG_00468(PF13385)(ER)
219305.MCAG_02671(PF02796)mitochondrial; (mitochondrial)
219305.MCAG_03747(PF13385)(mitochondrial)
219305.MCAG_00566PF00553(mitochondrial)
219305.MCAG_00834(PF13385)ER
219305.MCAG_00014(PF14200)ER
219305.MCAG_02530PF03664 PF00553(plastid)
219305.MCAG_00295(PF16317)ER
219305.MCAG_00414(PF05922)(mitochondrial); (plastid)
219305.MCAG_02061(PF00163)(mitochondrial)
219305.MCAG_04397(PF00652)ER
219305.MCAG_04766PF00553ER; plastid
219305.MCAG_00649(PF14200)ER
219305.MCAG_04981(PF13385)mitochondrial
219305.MCAG_01111(PF05922)ER
219305.MCAG_01113(PF01419)ER
219305.MCAG_00180(PF13529)ER
219305.MCAG_01588(PF14200)ER
219305.MCAG_01589PF00553mitochondrial; (mitochondrial)
219305.MCAG_01324(PF10503)ER
219305.MCAG_03288PF00553ER
219305.MCAG_03372(PF02018)mitochondrial; (mitochondrial)
219305.MCAG_05313PF00553ER
219305.MCAG_00960PF00553mitochondrial; ER
219305.MCAG_05198(PF14200)ER
219305.MCAG_00905(PF14765) (PF16197)(mitochondrial)
219305.MCAG_00901(PF14765) (PF16197) (PF00109)
219305.MCAG_02650(PF13385)ER
219305.MCAG_02657(PF14200)mitochondrial
219305.MCAG_01651(PF14587)ER
219305.MCAG_01472(PF00652)mitochondrial
219305.MCAG_02817PF00553ER
219305.MCAG_02052(PF07081)ER
219305.MCAG_05548(PF00331)(ER)
219305.MCAG_05549PF00553ER
219305.MCAG_01042PF00553(mitochondrial); (plastid)
219305.MCAG_03901(PF14200) (PF14498)(mitochondrial)
219305.MCAG_05143(PF14765)(ER)
219305.MCAG_00546(PF14765) (PF16197)
219305.MCAG_05061(PF00150)(mitochondrial)
219305.MCAG_05008(PF13385) (PF13151)not used
219305.MCAG_03644(PF16197) (PF00109)
219305.MCAG_02522(PF10503) (PF00652)
219305.MCAG_05140(PF16197) (PF00109)
219305.MCAG_05141(PF16197) (PF00109)
219305.MCAG_05195(PF16197) (PF00109)
219305.MCAG_05191(PF16197) (PF00109)
219305.MCAG_05605(PF00150) PF00553
219305.MCAG_05366(PF16197) (PF00109)
219305.MCAG_00541(PF16197) (PF00109)
219305.MCAG_04692(PF13385)(ER)
219305.MCAG_05186(PF00109)plastid
219305.MCAG_05187(PF00109)(mitochondrial)
219305.MCAG_00486(PF10503) PF00553
219305.MCAG_00488(PF16197) (PF00109)
219305.MCAG_05515(PF13385)(ER)
219305.MCAG_05185(PF16197) (PF00109)
219305.MCAG_05189(PF16197) (PF00109)
219305.MCAG_02542PF00553(mitochondrial)
219305.MCAG_00682PF03664 (PF14200)
219305.MCAG_05071(PF14200) (PF14498)
219305.MCAG_05137(PF16197) (PF00109)
219305.MCAG_05138(PF16197) (PF00109)
219305.MCAG_00663(PF10503)(plastid)
219305.MCAG_03373(PF02018)(plastid)
219305.MCAG_05334(PF00150) (PF14200)
219305.MCAG_00496(PF10503)(ER)
219305.MCAG_03916(PF00457)(ER)
219305.MCAG_05193(PF14765) (PF00109)
219305.MCAG_04607(PF00457)(plastid)
219305.MCAG_00490(PF16197) (PF00109)
219305.MCAG_03516(PF06772)not used
219305.MCAG_01612(PF03301)
219305.MCAG_00524PF03214
219305.MCAG_02369(PF02036)
219305.MCAG_02368(PF06202)
219305.MCAG_00203(PF14765)
219305.MCAG_00548(PF00109)not used
219305.MCAG_00544(PF16197)not used
219305.MCAG_00029(PF03301)
219305.MCAG_00795(PF12862)
219305.MCAG_01182(PF06772)
219305.MCAG_04641(PF02036)
219305.MCAG_00285(PF07081)
219305.MCAG_00283(PF01668)
219305.MCAG_03246(PF14200)
219305.MCAG_00746(PF06772)
219305.MCAG_00630PF00553
219305.MCAG_00749(PF13529)
219305.MCAG_05197(PF14765)
219305.MCAG_05190(PF14765)
219305.MCAG_05601(PF00163)
219305.MCAG_05603PF00553
219305.MCAG_05604(PF05922)
219305.MCAG_00652(PF00652)not used
219305.MCAG_00658(PF14200)
219305.MCAG_05597(PF02018)
219305.MCAG_05365(PF00109)
219305.MCAG_04992(PF00112)
219305.MCAG_04109(PF00331)not used
219305.MCAG_02753(PF13551)
219305.MCAG_01800(PF07081)
219305.MCAG_00374(PF00109)
219305.MCAG_00977(PF06202)
219305.MCAG_02180PF00553
219305.MCAG_01400(PF00109)
219305.MCAG_04443(PF13551)
219305.MCAG_05530(PF14231)
219305.MCAG_00467(PF13385)
219305.MCAG_02676(PF00112)
219305.MCAG_00131(PF02796)
219305.MCAG_01443PF00553
219305.MCAG_01442(PF14498)
219305.MCAG_03914(PF00652)
219305.MCAG_04409(PF13551)
219305.MCAG_03839(PF00454)
219305.MCAG_05295(PF00150)
219305.MCAG_03602(PF01789)
219305.MCAG_03993(PF01668)
219305.MCAG_01031(PF00457)
219305.MCAG_03509(PF13529)not used
219305.MCAG_02544(PF00112)
219305.MCAG_04035PF00553
219305.MCAG_05070(PF00652)
219305.MCAG_00030(PF03301)
219305.MCAG_00815(PF14200)
219305.MCAG_05274(PF14200)
219305.MCAG_03934(PF00652)
219305.MCAG_00254(PF14498)
219305.MCAG_03215(PF01847)
219305.MCAG_02535(PF00652)
219305.MCAG_00299(PF00102)
219305.MCAG_02277(PF06202)
219305.MCAG_00609(PF03984)
219305.MCAG_04949(PF02036)
219305.MCAG_03024(PF02036)
219305.MCAG_02707(PF13385)
219305.MCAG_00245PF00553
219305.MCAG_05580PF00553
219305.MCAG_00186PF00553
219305.MCAG_05133(PF14765)
219305.MCAG_03883(PF13551)
219305.MCAG_02717(PF02018)
219305.MCAG_00904(PF14765)
219305.MCAG_00906(PF00109)
219305.MCAG_02857(PF05922)
219305.MCAG_05502(PF02945)
219305.MCAG_04662(PF13529)
219305.MCAG_00615(PF00652)
219305.MCAG_01417PF00553
219305.MCAG_05151(PF02036)
219305.MCAG_05150(PF06202)
219305.MCAG_01656(PF06202)
219305.MCAG_01657(PF02036)
219305.MCAG_01471(PF00652)
219305.MCAG_04624PF00553
219305.MCAG_05289(PF14231)
219305.MCAG_00491(PF14765)
219305.MCAG_00085(PF02796)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================