Effective results for Croceibacter atlanticus HTCC2559 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 38 proteins (1 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
216432.CA2559_03565(PF07504) (PF00629)ER
216432.CA2559_02230(PF02128) (PF07504)ER
216432.CA2559_04145(PF02128) (PF07504)ER
216432.CA2559_04140(PF02128) (PF07504)ER
216432.CA2559_05520(PF13582)ER
216432.CA2559_09553(PF10988)ER
216432.CA2559_11513(PF08787)ER
216432.CA2559_11483(PF08787)ER
216432.CA2559_09051(PF07504)ER
216432.CA2559_07295(PF02709)(mitochondrial); mitochondrial
216432.CA2559_03655(PF10988)ER
216432.CA2559_11208(PF10988)ER
216432.CA2559_02895(PF03321)mitochondrial
216432.CA2559_00625(PF00629)ER
216432.CA2559_07565(PF07504)ER
216432.CA2559_01395(PF04784)ER
216432.CA2559_06025(PF10988)ER
216432.CA2559_05000(PF04784)ER
216432.CA2559_09483PF09229(mitochondrial)
216432.CA2559_06035(PF10988)ER
216432.CA2559_09548(PF10988)ER
216432.CA2559_01000(PF01094)ER
216432.CA2559_11528(PF08787)ER
216432.CA2559_05515(PF01679)ER; not used
216432.CA2559_13168(PF09445)(ER)
216432.CA2559_02650(PF01679)ER; not used
216432.CA2559_07811(PF10013)not used
216432.CA2559_00225(PF09537)
216432.CA2559_12233(PF07766)
216432.CA2559_06135(PF02709)
216432.CA2559_04630(PF09537)
216432.CA2559_12318(PF03321)
216432.CA2559_00655(PF03321)
216432.CA2559_02865(PF02709)
216432.CA2559_01010(PF03901)
216432.CA2559_01235(PF12899)
216432.CA2559_07210(PF09537)
216432.CA2559_12603(PF10504)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================