Metamenu

Effective results for Yersinia pestis CO92 (eggnog40)

Summary

Number of putative secreted proteins: 642
- Predicted by EffectiveT3: 187 (high confidence), 232 (low confidence)
- Predicted by EffectiveCCBD: 32 within, 21 before, 37 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 155 proteins (106 high, 49 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
214092.YPO1697+(PF00345)ER
214092.YPO0807+(mitochondrial)
214092.YPO1813(>)ER
214092.YPO1695+(<)(mitochondrial); (plastid)
214092.YPO1722(>)ER
214092.YPO2043(>)mitochondrial
214092.YPO2045(PF13332)(ER)
214092.YPO1706(>)ER
214092.YPO1708(PF00345)ER
214092.YPO0386PF02796 PF00665(plastid)
214092.YPO1968PF02796 PF00665(plastid)
214092.YPO3014+ER
214092.YPO4046PF13518(mitochondrial)
214092.YPO2944(PF00345)ER
214092.YPO3492PF13518(mitochondrial)
214092.YPO3701PF02796 PF00665(plastid)
214092.YPO2721PF02796 PF00665(plastid)
214092.YPO1623PF02796 PF00665(plastid)
214092.YPO1711(PF00345)mitochondrial
214092.YPO3626(>)(ER)
214092.YPO1086PF02796 PF00665(plastid)
214092.YPO3530(>)ER
214092.YPO1574(>)ER
214092.YPO0119PF13518(mitochondrial)
214092.YPO0755PF13518(mitochondrial)
214092.YPO3228+mitochondrial
214092.YPO3055(<)ER
214092.YPO0294+(mitochondrial)
214092.YPO0567PF02796 PF00665(plastid)
214092.YPO0031PF02796 PF00665(plastid)
214092.YPO0637PF02796 PF00665(plastid)
214092.YPO2674+ER
214092.YPO2073+ER
214092.YPO0826PF02796 PF00665(plastid)
214092.YPO3931PF13518(mitochondrial)
214092.YPO2466+ER
214092.YPO3591PF02796 PF00665(plastid)
214092.YPO2516PF02796 PF00665(plastid)
214092.YPO2884(PF08964)ER
214092.YPO3209PF02796 PF00665(plastid)
214092.YPO2085PF02796 PF00665(plastid)
214092.YPO2643PF02796 PF00665(plastid)
214092.YPO3592APF13518(mitochondrial)
214092.YPO1692PF02796 PF00665(plastid)
214092.YPO1348(<)ER
214092.YPO1520PF02796 PF00665(plastid)
214092.YPO3906(+)+(mitochondrial)
214092.YPO3878(PF00345)ER
214092.YPO3876(<)(mitochondrial)
214092.YPO3877+ER
214092.YPO1750PF02796 PF00665(plastid)
214092.YPO0249PF02796 PF00665(plastid)
214092.YPO0339(PF03272)mitochondrial
214092.YPO0798(>)ER
214092.YPO4010PF02796 PF00665(plastid)
214092.YPO2423+(mitochondrial)
214092.YPO0924PF02796 PF00665(plastid)
214092.YPO0780PF02796 PF00665(plastid)
214092.YPO3251PF02796 PF00665(plastid)
214092.YPO3962(>)ER
214092.YPO1338PF02796 PF00665(plastid)
214092.YPO0862(<)ER
214092.YPO3794(>)ER
214092.YPO3881(PF00345)ER
214092.YPO3069(PF07720)ER
214092.YPO2932PF02796 PF00665(plastid)
214092.YPO1011+ER
214092.YPO1013PF02796 PF00665(plastid)
214092.YPO0699(PF00345)ER
214092.YPO1900PF02796 PF00665(plastid)
214092.YPO1302(>)ER
214092.YPO0050+(mitochondrial)
214092.YPO3434PF02796 PF00665(plastid)
214092.YPO2696(PF02112)mitochondrial; (mitochondrial)
214092.YPO2692(>)ER
214092.YPO1317+ER; (ER)
214092.YPO1159(<)(mitochondrial)
214092.YPO0996PF13518mitochondrial
214092.YPO1918(PF00345)ER
214092.YPO2355+ER
214092.YPO2178PF02796 PF00665(plastid)
214092.YPO0856(>)mitochondrial
214092.YPO1921(PF00345)ER
214092.YPO3985+(>)
214092.YPO0723+mitochondrial; plastid
214092.YPO2767(<)ER
214092.YPO2169(>)(mitochondrial)
214092.YPO0028(>)mitochondrial
214092.YPO1289(<)mitochondrial
214092.YPO3756PF02796 PF00665(plastid)
214092.YPO0716(PF09811)mitochondrial
214092.YPO3282PF02796 PF00665(plastid)
214092.YPO2808PF02796 PF00665(plastid)
214092.YPO2396PF02796 PF00665(plastid)
214092.YPO3568(>)ER
214092.YPO2026PF02796 PF00665(plastid)
214092.YPO1729PF02796 PF00665(plastid)
214092.YPO0097PF02796 PF00665(plastid)
214092.YPO0528PF02796 PF00665(plastid)
214092.YPO0524+(mitochondrial)
214092.YPO2490(PF13332)mitochondrial
214092.YPO2365PF02796 PF00665(plastid)
214092.YPO3542PF02796 PF00665(plastid)
214092.YPO1132PF02796 PF00665(plastid)
214092.YPO1427PF02796 PF00665(plastid)
214092.YPO0171PF02796 PF00665(plastid)
214092.YPO4091PF13518(mitochondrial)
214092.YPO0770(>)mitochondrial
214092.YPO0778+(mitochondrial); (plastid)
214092.YPO3774PF02796 PF00665(plastid)
214092.YPO1960+(mitochondrial)
214092.YPO1316+(plastid)
214092.YPO4041(PF00345)(mitochondrial)
214092.YPO4045+
214092.YPO2940+(plastid)
214092.YPO2837+(<)
214092.YPO3538(+)mitochondrial; (mitochondrial)
214092.YPO3627+(plastid)
214092.YPO3828(PF03272)(mitochondrial)
214092.YPO3721(PF13332)(ER)
214092.YPO1371(+)ER
214092.YPO2453(+)(ER); plastid
214092.YPO1206+(plastid)
214092.YPO0904+(PF13924)
214092.YPO2257++
214092.YPO3302(+)ER
214092.YPO1325+plastid
214092.YPO3880(+)mitochondrial
214092.YPO3140(>)(ER)
214092.YPO2498+(mitochondrial)
214092.YPO2577+(plastid)
214092.YPO1477+(plastid)
214092.YPO0278++
214092.YPO3506(+)(ER)
214092.YPO3437+(plastid)
214092.YPO2323(+)(mitochondrial)
214092.YPO2294(+)(mitochondrial)
214092.YPO1913+(ER)
214092.YPO3640(+)ER
214092.YPO0738+(plastid)
214092.YPO0739+(plastid)
214092.YPO3028(+)ER
214092.YPO0104+(plastid)
214092.YPO1073(+)mitochondrial
214092.YPO0725+(plastid)
214092.YPO0724++
214092.YPO2768+(mitochondrial)
214092.YPO2014++
214092.YPO1842+plastid
214092.YPO3628(<)(ER)
214092.YPO1042(+)(mitochondrial); mitochondrial
214092.YPO0148(+)(ER); ER
214092.YPO2706+(plastid)
214092.YPO2140(+)ER
214092.YPO0178+(>)
214092.YPO3391+
214092.YPO3398+
214092.YPO0385PF01695
214092.YPO1561(PF00872)
214092.YPO1969PF01695
214092.YPO1643+
214092.YPO1234+
214092.YPO1642(+)(mitochondrial)
214092.YPO4047PF00665
214092.YPO2942(PF00872)
214092.YPO3491PF00665
214092.YPO3497(<)
214092.YPO3708+
214092.YPO3702PF13518not used
214092.YPO3703PF00665
214092.YPO3700PF01695
214092.YPO3707+
214092.YPO3123+
214092.YPO2834+
214092.YPO2619+
214092.YPO3232(+)(ER)
214092.YPO2722PF01695
214092.YPO2726(+)(plastid)
214092.YPO2053+
214092.YPO2576+
214092.YPO1622PF01695
214092.YPO1621(PF00872)
214092.YPO3166+
214092.YPO1085PF01695
214092.YPO1083+
214092.YPO0977+
214092.YPO1150+
214092.YPO1395(+)+
214092.YPO0375+
214092.YPO0117+
214092.YPO0118PF00665
214092.YPO0285+
214092.YPO4057+
214092.YPO0756PF00665
214092.YPO0599(PF13332)
214092.YPO0590+
214092.YPO2447(PF00872)
214092.YPO0626(<)
214092.YPO2844(>)
214092.YPO3820+
214092.YPO2530+
214092.YPO2194(PF00872)
214092.YPO3229+not used
214092.YPO3222(>)
214092.YPO2266+
214092.YPO2264+
214092.YPO1466+
214092.YPO1768+
214092.YPO1763+
214092.YPO1500+
214092.YPO1984+
214092.YPO1988(PF00872)
214092.YPO0292+
214092.YPO3922+
214092.YPO3283PF01695
214092.YPO0566PF01695
214092.YPO0565(<)
214092.YPO0030PF01695
214092.YPO0584+
214092.YPO0587+
214092.YPO2987+
214092.YPO3453+
214092.YPO2989+
214092.YPO0634+not used
214092.YPO0638PF01695
214092.YPO2855+
214092.YPO2857+
214092.YPO3585+
214092.YPO2673+
214092.YPO3292+
214092.YPO2291+
214092.YPO0034+
214092.YPO2075+
214092.YPO2271+
214092.YPO2185+
214092.YPO1776+
214092.YPO1171(+)+
214092.YPO3725+
214092.YPO0825PF01695
214092.YPO1519PF01695
214092.YPO1996+
214092.YPO3932PF00665
214092.YPO3936+
214092.YPO3452(<)
214092.YPO3735+
214092.YPO3739+
214092.YPO2862(PF00872)
214092.YPO3594(<)
214092.YPO3592PF01695
214092.YPO2517PF01695
214092.YPO3023(+)(mitochondrial)
214092.YPO2886+
214092.YPO2885(+)(plastid)
214092.YPO2882+
214092.YPO3208PF01695
214092.YPO2086PF01695
214092.YPO2646+
214092.YPO2642PF01695
214092.YPO2523+
214092.YPO1748+
214092.YPO1245(>)
214092.YPO0900+
214092.YPO0902+not used
214092.YPO0905+
214092.YPO1691PF01695
214092.YPO1346(PF03059)
214092.YPO0162+
214092.YPO3909+
214092.YPO0011(PF00872)
214092.YPO0010+
214092.YPO3696+
214092.YPO1831+
214092.YPO0128(+)(plastid)
214092.YPO2872+
214092.YPO3875(PF00872)
214092.YPO3872(>)
214092.YPO2503+
214092.YPO4009PF01695
214092.YPO2896(+)(>)
214092.YPO2478+
214092.YPO2474+
214092.YPO2473(PF08950)
214092.YPO2097+
214092.YPO2096+
214092.YPO2093+
214092.YPO2650+
214092.YPO2656(PF00872)
214092.YPO0743+
214092.YPO1751PF01695
214092.YPO1756+
214092.YPO1359+
214092.YPO1681+
214092.YPO1538+
214092.YPO0248PF01695
214092.YPO3919+
214092.YPO1226+
214092.YPO1221+
214092.YPO0332+
214092.YPO0069+not used
214092.YPO1828+
214092.YPO1825+
214092.YPO4122(<)
214092.YPO3461+
214092.YPO0465+
214092.YPO0461(>)
214092.YPO2799(PF00872)
214092.YPO1236+
214092.YPO2136(PF00872)
214092.YPO2133+
214092.YPO0923PF01695
214092.YPO1321+
214092.YPO2541(>)
214092.YPO3678(PF12255)
214092.YPO3681(+)(PF03538)
214092.YPO0678+
214092.YPO3897+
214092.YPO3252PF01695
214092.YPO3098+
214092.YPO3096+
214092.YPO2078+
214092.YPO2783(PF00872)
214092.YPO2237+
214092.YPO2126+
214092.YPO1174+
214092.YPO1339PF01695
214092.YPO1330+
214092.YPO1797+
214092.YPO0262+
214092.YPO3662+
214092.YPO1802(+)(plastid)
214092.YPO1801+
214092.YPO1808+
214092.YPO0682(>)
214092.YPO0440+
214092.YPO3882+not used
214092.YPO4017+
214092.YPO2931PF01695
214092.YPO2938+
214092.YPO2756+
214092.YPO2686+
214092.YPO0988+
214092.YPO2110+
214092.YPO3264+
214092.YPO1992(>)
214092.YPO1496(>)
214092.YPO1493(PF00872)
214092.YPO1304(PF00345)
214092.YPO1307(+)(ER)
214092.YPO1014PF01695
214092.YPO1015(+)plastid
214092.YPO0303(+)(PF00345)
214092.YPO3654+
214092.YPO1873PF00665
214092.YPO0260a+
214092.YPO1908+
214092.YPO1901PF01695
214092.YPO3503+
214092.YPO3435PF01695
214092.YPO2213+
214092.YPO2211+
214092.YPO3348PF13518
214092.YPO2694+
214092.YPO2104(PF00872)
214092.YPO2108(>)
214092.YPO1311+
214092.YPO0840+
214092.YPO1008(<)
214092.YPO1007+
214092.YPO1006+
214092.YPO1005+
214092.YPO4108(>)
214092.YPO0978+
214092.YPO1269(+)(mitochondrial)
214092.YPO1260(+)(ER)
214092.YPO0997PF00665
214092.YPO1465+
214092.YPO1461(PF13924)
214092.YPO0516+
214092.YPO1912+
214092.YPO0737+
214092.YPO0732+
214092.YPO0733+
214092.YPO2170(PF00872)
214092.YPO2177PF01695
214092.YPO2009(+)PF00665
214092.YPO3818(<)
214092.YPO2769+
214092.YPO1671+
214092.YPO1678+
214092.YPO1589(PF00872)
214092.YPO1583(PF00872)
214092.YPO1296+
214092.YPO1850(<)
214092.YPO1928(+)(plastid)
214092.YPO3297+
214092.YPO3188(>)
214092.YPO2760+
214092.YPO0027(>)
214092.YPO0451+
214092.YPO1280+
214092.YPO0531+
214092.YPO0536+
214092.YPO1840(+)+
214092.YPO3755PF01695
214092.YPO0401(+)(plastid)
214092.YPO3629+
214092.YPO2571(PF00872)
214092.YPO2716(>)
214092.YPO2486+
214092.YPO2809PF01695
214092.YPO2397PF01695
214092.YPO2390+
214092.YPO2227+
214092.YPO2025PF01695
214092.YPO1035+
214092.YPO1727(PF00872)
214092.YPO1092a+
214092.YPO1431+
214092.YPO1436+
214092.YPO3760+
214092.YPO3613+
214092.YPO1940+
214092.YPO0096PF01695
214092.YPO0527PF01695
214092.YPO2965+
214092.YPO2499+
214092.YPO2361+
214092.YPO2364PF01695
214092.YPO3547(+)(ER)
214092.YPO3543PF01695
214092.YPO2145+
214092.YPO2387(+)(>)
214092.YPO1606+
214092.YPO1730PF01695
214092.YPO1048(+)(mitochondrial)
214092.YPO3787+
214092.YPO1131PF01695
214092.YPO1426PF01695
214092.YPO1429(<)
214092.YPO2009a+
214092.YPO1557+
214092.YPO0172PF01695
214092.YPO4092PF00665
214092.YPO3602+
214092.YPO0776+
214092.YPO0779PF01695
214092.YPO2951(+)(PF11397)
214092.YPO2959+
214092.YPO3773PF01695
214092.YPO0601(+)
214092.YPO1114(+)
214092.YPO2820(+)
214092.YPO1113(+)
214092.YPO2730(+)
214092.YPO1936(+)
214092.YPO3158(+)
214092.YPO1090(+)
214092.YPO1149(+)
214092.YPO0764(+)
214092.YPO0157(+)
214092.YPO0611(+)
214092.YPO0610(+)
214092.YPO3554(+)
214092.YPO3839(+)
214092.YPO3230(+)
214092.YPO3768(+)
214092.YPO1713(+)
214092.YPO1080(+)
214092.YPO1409(+)
214092.YPO1155(+)
214092.YPO1390(+)
214092.YPO0111(+)
214092.YPO0286(+)
214092.YPO0021(+)
214092.YPO0596(+)
214092.YPO3719(+)
214092.YPO3718(+)
214092.YPO2440(+)
214092.YPO2449(+)
214092.YPO0627(+)
214092.YPO2842(+)
214092.YPO2534(+)
214092.YPO2263(+)
214092.YPO1467(+)
214092.YPO2777(+)
214092.YPO1766(+)
214092.YPO3176(+)
214092.YPO1160(+)
214092.YPO1360(+)
214092.YPO0367(+)
214092.YPO1185(+)
214092.YPO0368(+)
214092.YPO1181(+)
214092.YPO0298(+)
214092.YPO1212(+)
214092.YPO1213(+)
214092.YPO0588(+)
214092.YPO0586(+)
214092.YPO0636(+)
214092.YPO3851(+)
214092.YPO2526(+)
214092.YPO2672(+)
214092.YPO0429(+)
214092.YPO0919(+)
214092.YPO4113(+)
214092.YPO0941(+)
214092.YPO0821(+)
214092.YPO1142(+)
214092.YPO1413(+)
214092.YPO3443(+)
214092.YPO2880(+)
214092.YPO2087(+)
214092.YPO1246(+)
214092.YPO1962(+)
214092.YPO1832(+)
214092.YPO1830(+)
214092.YPO0127+
214092.YPO0653(+)
214092.YPO2504(+)
214092.YPO4001(+)
214092.YPO3271(+)
214092.YPO1086a(+)not used
214092.YPO0938(+)
214092.YPO0939(+)
214092.YPO1533(+)
214092.YPO0246(+)
214092.YPO0240(+)
214092.YPO3916(+)
214092.YPO1826(+)
214092.YPO4127(+)
214092.YPO4123(+)
214092.YPO0462(+)
214092.YPO3865(+)
214092.YPO2317(+)
214092.YPO3261(+)
214092.YPO2793(+)
214092.YPO2409(+)
214092.YPO2407(+)
214092.YPO2404(+)
214092.YPO2138(+)
214092.YPO2131(+)
214092.YPO0476a(+)
214092.YPO0268a(+)
214092.YPO1548(+)
214092.YPO1250(+)
214092.YPO3676(+)
214092.YPO3673+
214092.YPO3782(+)
214092.YPO0789(+)
214092.YPO3093(+)
214092.YPO3963(+)
214092.YPO0383(+)
214092.YPO0864(+)
214092.YPO0260(+)
214092.YPO0316(+)
214092.YPO1249(+)
214092.YPO1190(+)
214092.YPO1800(+)
214092.YPO0442(+)
214092.YPO0445(+)
214092.YPO3532(+)
214092.YPO3082(+)
214092.YPO1994(+)
214092.YPO0509(+)
214092.YPO1491(+)
214092.YPO1654(+)
214092.YPO1308(+)
214092.YPO1309(+)
214092.YPO1274(+)
214092.YPO1476(+)
214092.YPO1875(+)not used
214092.YPO0275(+)
214092.YPO0453(+)
214092.YPO3432(+)
214092.YPO2325(+)
214092.YPO1487(+)
214092.YPO1644(+)
214092.YPO4106(+)
214092.YPO3804(+)
214092.YPO0846(+)
214092.YPO0849(+)
214092.YPO2037(+)
214092.YPO3738(+)
214092.YPO1009(+)
214092.YPO0992(+)
214092.YPO1861(+)
214092.YPO0197(+)
214092.YPO1914(+)
214092.YPO2599(+)
214092.YPO0736(+)
214092.YPO2006(+)
214092.YPO4038(+)
214092.YPO1581(+)
214092.YPO2342(+)
214092.YPO3639(+)
214092.YPO3564(+)
214092.YPO2586(+)
214092.YPO0720(+)
214092.YPO3186(+)
214092.YPO3368(+)
214092.YPO3167(+)
214092.YPO2340(+)
214092.YPO0758(+)
214092.YPO0450(+)
214092.YPO1068(+)
214092.YPO1286(+)
214092.YPO1939(+)
214092.YPO0718(+)
214092.YPO0715(+)
214092.YPO3190(+)
214092.YPO2710(+)
214092.YPO2482(+)
214092.YPO3174(+)not used
214092.YPO2805(+)
214092.YPO2801(+)
214092.YPO1905a(+)
214092.YPO1614(+)
214092.YPO3829(+)
214092.YPO1721(+)
214092.YPO2747(+)
214092.YPO0234(+)
214092.YPO1547(+)
214092.YPO0146(+)
214092.YPO2564(+)
214092.YPO2566(+)
214092.YPO2980(+)
214092.YPO1298(+)
214092.YPO3389(+)
214092.YPO3147(+)
214092.YPO1116(+)
214092.YPO2380(+)
214092.YPO2383(+)
214092.YPO3978(+)
214092.YPO1603(+)
214092.YPO0952(+)
214092.YPO0390(+)
214092.YPO3976(+)
214092.YPO3606(+)
214092.YPO2551(+)
214092.YPO2553(+)
214092.YPO4078(+)
214092.YPO4074(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.7 (17/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 3.625 (29/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================