Metamenu

Effective results for Streptococcus agalactiae NEM316 (eggnog40)

Summary

Number of putative secreted proteins: 149
- Predicted by T4SEpre: 128
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 51 proteins (2 high, 49 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
211110.gbs1288+(PF03714)(mitochondrial)
211110.gbs0456+(ER); ER
211110.gbs0180+ER
211110.gbs2107+ER
211110.gbs1606+ER
211110.gbs0428+(mitochondrial)
211110.gbs0734(PF05257)ER
211110.gbs0957+ER
211110.gbs2000+ER
211110.gbs2008(PF06280)ER
211110.gbs0153+ER
211110.gbs0609+ER
211110.gbs0975(PF05257)ER
211110.gbs1895+ER
211110.gbs0404(PF05257)ER
211110.gbs1087PF08017mitochondrial
211110.gbs1379(PF13787)ER
211110.gbs0355+ER
211110.gbs0288+ER
211110.gbs0918+ER
211110.gbs1983+ER
211110.gbs1195+ER; (ER)
211110.gbs0629(PF05738)ER
211110.gbs0636(PF05738)ER
211110.gbs0632(PF05738)ER
211110.gbs0440+ER
211110.gbs0444+ER
211110.gbs0002+mitochondrial; (mitochondrial)
211110.gbs1451+(ER); ER
211110.gbs1308(PF06280)(ER)
211110.gbs0307+mitochondrial
211110.gbs0016(PF05257)ER
211110.gbs0687+ER
211110.gbs1274+(ER)
211110.gbs1675+ER
211110.gbs0473+ER
211110.gbs0078(PF00344)mitochondrial
211110.gbs1279(PF13529)(mitochondrial)
211110.gbs1477(PF05738)ER
211110.gbs1474(PF05738)ER
211110.gbs1478(PF05738)ER
211110.gbs1727(PF05257)ER
211110.gbs0451+(PF06280)
211110.gbs0988(PF13529)(ER)
211110.gbs1862+(mitochondrial)
211110.gbs1372+(mitochondrial)
211110.gbs0721(PF13529)(ER)
211110.gbs0716+(PF13155)
211110.gbs1431+(mitochondrial)
211110.gbs0386+(PF13155)
211110.gbs1771+(plastid)
211110.gbs0391(PF13529)(ER)
211110.gbs1348+(PF13155)
211110.gbs1090+(mitochondrial)
211110.gbs1667+(mitochondrial)
211110.gbs1065+(mitochondrial)
211110.gbs0993+(PF13155)
211110.gbs1126+(PF13155)
211110.gbs0053+
211110.gbs0059+
211110.gbs0980(PF00533)
211110.gbs0526+
211110.gbs1917(PF02502)
211110.gbs1918(PF02502)
211110.gbs1865+
211110.gbs1133(PF05257)
211110.gbs0089+
211110.gbs0083+
211110.gbs0087+
211110.gbs1456+
211110.gbs0244+
211110.gbs1636+
211110.gbs0433(PF05495)
211110.gbs0729(PF00533)
211110.gbs0894+
211110.gbs0547+
211110.gbs2015(PF01501)
211110.gbs2014+
211110.gbs2016(PF01501)
211110.gbs2018+
211110.gbs1444+
211110.gbs1841+
211110.gbs1627+
211110.gbs0399(PF00533)
211110.gbs0377+
211110.gbs1380(PF13787)
211110.gbs1892(PF02502)
211110.gbs0707+
211110.gbs0968+
211110.gbs1950+
211110.gbs1954+
211110.gbs0287+
211110.gbs1410+
211110.gbs1966+
211110.gbs1745+
211110.gbs1987+
211110.gbs1346+
211110.gbs0341+
211110.gbs0291+
211110.gbs0900+
211110.gbs2050+
211110.gbs2057+
211110.gbs0831(PF01501)
211110.gbs1572+
211110.gbs1199+
211110.gbs1359(PF05257)
211110.gbs1821+
211110.gbs1698+
211110.gbs1694+
211110.gbs1035+
211110.gbs0105+
211110.gbs0326+
211110.gbs0329+
211110.gbs0254+
211110.gbs0447+
211110.gbs0228+
211110.gbs1335(PF02502)
211110.gbs1336(PF02502)
211110.gbs0648+
211110.gbs0868(PF00533)
211110.gbs1525(PF01501)
211110.gbs1526(PF01501)
211110.gbs1527(PF01501)
211110.gbs1522(PF00344)
211110.gbs0276+
211110.gbs0870(PF03714)
211110.gbs0877+
211110.gbs1223+
211110.gbs1314+
211110.gbs1002+
211110.gbs0461+
211110.gbs0469+
211110.gbs0208+
211110.gbs0209+
211110.gbs2130+
211110.gbs1497(PF13155)
211110.gbs0475+
211110.gbs0073+
211110.gbs0505+
211110.gbs0504+
211110.gbs1247PF02916
211110.gbs1805(PF05257)
211110.gbs0539+
211110.gbs2110+
211110.gbs1872+
211110.gbs1725+
211110.gbs1721+
211110.gbs1299+
211110.gbs1294+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================