Metamenu

Effective results for Neptuniibacter caesariensis (eggnog40)

Summary

Number of putative secreted proteins: 137
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 137 proteins (2 high, 135 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
207954.MED92_06886(PF13426) (PF00563) (PF00990)ER
207954.MED92_00805(PF00990) (PF00563) (PF13426)ER
207954.MED92_06353(PF00990) (PF00563) (PF13426)(ER)
207954.MED92_15203(PF00990) (PF00563) (PF13426)ER; (ER)
207954.MED92_11304(PF00990) (PF00563) (PF13426)ER
207954.MED92_11314(PF13426) (PF00563) (PF00990)ER
207954.MED92_07441(PF00990) (PF00563) (PF13426)ER
207954.MED92_04779(PF00990) (PF00563) (PF13426)ER
207954.MED92_13171(PF00990) (PF00563) (PF13426)(ER)
207954.MED92_14638(PF00563) (PF00990)ER
207954.MED92_09541(PF00563) (PF00990)mitochondrial
207954.MED92_01354(PF00563) (PF00990)ER
207954.MED92_07216(PF00563) (PF00990)ER
207954.MED92_03063(PF00563) (PF00990)(mitochondrial)
207954.MED92_09571(PF13426) (PF00563) (PF00990)(ER)
207954.MED92_03857(PF00563) (PF00990)ER
207954.MED92_11724(PF00563) (PF00990)ER
207954.MED92_06746(PF00990) (PF00563) (PF13426)(ER)
207954.MED92_08600(PF00563) (PF00990)(mitochondrial); plastid
207954.MED92_04949(PF00563) (PF00990)ER
207954.MED92_07561(PF00563) (PF00990)ER
207954.MED92_08381(PF00563) (PF00990)(mitochondrial)
207954.MED92_14938(PF00563) (PF00990)ER
207954.MED92_05963(PF00563) (PF00990)ER
207954.MED92_01024(PF00563) (PF00990)ER
207954.MED92_06598(PF13426) (PF00563) (PF00990)(mitochondrial)
207954.MED92_02743(PF00563) (PF00990)ER; (ER)
207954.MED92_03573(PF00990) (PF00563) (PF13426)(ER)
207954.MED92_06263(PF00990) (PF13426)ER
207954.MED92_03058(PF00990)ER
207954.MED92_08540(PF01679)ER
207954.MED92_01429(PF00563)ER
207954.MED92_03583(PF00990)(mitochondrial)
207954.MED92_09101(PF00990)ER
207954.MED92_04292(PF00990)mitochondrial; (mitochondrial)
207954.MED92_17369(PF00990) (PF00563) (PF13426)
207954.MED92_15453(PF00990)ER
207954.MED92_04849(PF00990) (PF00563) (PF13426)
207954.MED92_11824(PF00990)ER
207954.MED92_11034(PF00990)(ER)
207954.MED92_03647(PF00990)ER
207954.MED92_05953(PF00990)ER
207954.MED92_01384(PF00990)mitochondrial
207954.MED92_00390(PF00990)ER
207954.MED92_06493(PF00990)ER
207954.MED92_15323(PF00990)ER; (ER)
207954.MED92_12361(PF13426)ER
207954.MED92_14423(PF00990)(ER)
207954.MED92_01901(PF00563) (PF00990)(ER)
207954.MED92_07851(PF00990)ER
207954.MED92_09441(PF00990) (PF00563) (PF13426)
207954.MED92_00325(PF00990) (PF00563) (PF13426)
207954.MED92_13011(PF00990) (PF00563) (PF13426)
207954.MED92_17269(PF00990) (PF00563) (PF13426)
207954.MED92_14593(PF00990) (PF00563) (PF13426)
207954.MED92_00330(PF00990)(ER)
207954.MED92_06871(PF00990) (PF00563) (PF13426)
207954.MED92_07656(PF00990)ER
207954.MED92_15188(PF00990)ER
207954.MED92_12401(PF00990)(ER)
207954.MED92_15168(PF00050)ER
207954.MED92_18118(PF00990)ER
207954.MED92_05488(PF00990) (PF00563) (PF13426)
207954.MED92_14623(PF00990)(mitochondrial); mitochondrial
207954.MED92_11509(PF00990)(ER)
207954.MED92_01374(PF00990)ER
207954.MED92_03318(PF00990)ER
207954.MED92_03133(PF00990)(mitochondrial)
207954.MED92_11284(PF00990) (PF13426)
207954.MED92_01369(PF00563) (PF00990)
207954.MED92_10804(PF01679)ER; not used
207954.MED92_06343(PF00563) (PF00990)
207954.MED92_05858(PF00563) (PF00990)
207954.MED92_12931(PF00563) (PF00990)
207954.MED92_12926(PF00563) (PF00990)
207954.MED92_12481(PF00563) (PF00990)
207954.MED92_06806(PF00563) (PF00990)
207954.MED92_18163(PF00990) (PF13426)
207954.MED92_01289(PF00563) (PF00990)
207954.MED92_02061(PF00990) (PF13426)
207954.MED92_07611(PF00563) (PF00990)
207954.MED92_10319(PF13759)(ER)
207954.MED92_06711(PF00563) (PF00990)
207954.MED92_17793(PF00990) (PF13426)
207954.MED92_12961(PF00990) (PF13426)
207954.MED92_02136(PF00990) (PF13426)
207954.MED92_06113PF00014(ER); not used
207954.MED92_12696(PF00990) (PF13426)not used
207954.MED92_05903(PF00563) (PF00990)
207954.MED92_10874(PF00990) (PF13426)
207954.MED92_01816(PF00990)
207954.MED92_14033(PF13426)
207954.MED92_12476(PF00990)
207954.MED92_12471(PF00563)
207954.MED92_08301(PF00990)
207954.MED92_05278(PF00990)
207954.MED92_06433(PF00990)
207954.MED92_17893(PF00990)
207954.MED92_12049(PF00563)
207954.MED92_05208(PF11969)
207954.MED92_12871(PF05088)
207954.MED92_13898(PF00990)
207954.MED92_07901(PF00990)
207954.MED92_08971(PF00563)
207954.MED92_06368(PF00990)
207954.MED92_12601(PF05088)
207954.MED92_03268(PF00563)
207954.MED92_03717(PF00990)
207954.MED92_05223(PF00990)
207954.MED92_11829(PF00990)
207954.MED92_00280PF01231
207954.MED92_13663(PF05088)
207954.MED92_15278(PF00990)
207954.MED92_14658(PF00990)
207954.MED92_10119(PF00990)
207954.MED92_06976(PF00563)
207954.MED92_12836(PF14336)
207954.MED92_12631(PF00990)
207954.MED92_08435(PF00990)
207954.MED92_04719(PF00563)
207954.MED92_12209(PF12038)
207954.MED92_11174(PF00990)
207954.MED92_09111(PF00990)
207954.MED92_17798(PF13426)
207954.MED92_15248(PF13759)
207954.MED92_14933(PF00990)
207954.MED92_08707(PF00990)
207954.MED92_14688(PF00990)
207954.MED92_13813(PF13426)
207954.MED92_15508(PF00990)
207954.MED92_01319(PF00990)
207954.MED92_15378(PF00990)
207954.MED92_03418(PF00563)
207954.MED92_04327(PF00990)
207954.MED92_05328(PF00990)
207954.MED92_06891(PF00990)
207954.MED92_08847(PF00990)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================