Metamenu

Effective results for Bermanella marisrubri (eggnog40)

Summary

Number of putative secreted proteins: 15
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 15 proteins (1 high, 14 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
207949.RED65_01255(PF12483)ER
207949.RED65_09894(PF03015)(mitochondrial); plastid
207949.RED65_14077(PF00344)(ER)
207949.RED65_04270PF10277ER
207949.RED65_05469(PF16036)ER
207949.RED65_07354(PF16036)ER
207949.RED65_14922(PF16036)ER
207949.RED65_09569(PF16036)ER
207949.RED65_12534(PF16036)(plastid)
207949.RED65_13067(PF10013)not used
207949.RED65_14082(PF00344)
207949.RED65_08024(PF06662)
207949.RED65_16241(PF14336)
207949.RED65_01740(PF08732)
207949.RED65_13632(PF12038)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================