Metamenu

Effective results for Pseudomonas syringae pv. syringae B728a (eggnog40)

Summary

Number of putative secreted proteins: 808
- Predicted by EffectiveT3: 263 (high confidence), 337 (low confidence)
- Predicted by EffectiveCCBD: 15 within, 17 before, 38 behind expected region 25..70aa
- Predicted by T4SEpre: 140
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 63 proteins (1 high, 62 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
205918.Psyr_2970(>)+mitochondrial
205918.Psyr_2322+(PF05593)mitochondrial; ER
205918.Psyr_2321+(PF05593)ER
205918.Psyr_0785+(PF12729)(ER)
205918.Psyr_3534++ER
205918.Psyr_1303+(PF12729)ER
205918.Psyr_1414+(ER)
205918.Psyr_4625+ER
205918.Psyr_0380+mitochondrial; (mitochondrial)
205918.Psyr_1491(PF12729)ER
205918.Psyr_0634+ER
205918.Psyr_4009+ER
205918.Psyr_0526(PF06293)ER; (ER)
205918.Psyr_4856+ER
205918.Psyr_1863(<)ER
205918.Psyr_1862+(ER); (plastid)
205918.Psyr_4706(PF12729)(mitochondrial)
205918.Psyr_0282+(ER)
205918.Psyr_5098+ER
205918.Psyr_0359(>)(mitochondrial)
205918.Psyr_4620+ER
205918.Psyr_4151(>)mitochondrial
205918.Psyr_3075+mitochondrial; (mitochondrial)
205918.Psyr_3078(>)ER
205918.Psyr_3675(>)(mitochondrial)
205918.Psyr_2109(PF12729)ER
205918.Psyr_5066+ER
205918.Psyr_4322+mitochondrial
205918.Psyr_0845+ER
205918.Psyr_4875(>)ER
205918.Psyr_4471+mitochondrial
205918.Psyr_1951(>)ER
205918.Psyr_1351+ER
205918.Psyr_1594+ER
205918.Psyr_2634(PF12729)(ER)
205918.Psyr_5049+ER
205918.Psyr_4878+ER
205918.Psyr_0366+(mitochondrial); (plastid)
205918.Psyr_4089(<)ER
205918.Psyr_3616(>)ER
205918.Psyr_3519(>)mitochondrial
205918.Psyr_3047+(mitochondrial)
205918.Psyr_2320+(PF05593)(mitochondrial)
205918.Psyr_4755+(ER)
205918.Psyr_3526(>)(mitochondrial)
205918.Psyr_3037+ER; (ER)
205918.Psyr_2329+ER
205918.Psyr_2325+ER
205918.Psyr_3921(>)(ER); ER
205918.Psyr_1789(PF12729)ER
205918.Psyr_1054+ER
205918.Psyr_3449+(mitochondrial); plastid
205918.Psyr_3246+ER
205918.Psyr_4785+ER
205918.Psyr_1156+ER
205918.Psyr_0935+ER
205918.Psyr_1468+mitochondrial
205918.Psyr_0603+mitochondrial
205918.Psyr_3035+(ER)
205918.Psyr_3787+ER; plastid
205918.Psyr_2878(PF12729)ER
205918.Psyr_1942+ER
205918.Psyr_1416+ER
205918.Psyr_0921(<)(mitochondrial)
205918.Psyr_0328+ER
205918.Psyr_1218+(mitochondrial); plastid
205918.Psyr_0355+(ER)
205918.Psyr_0860(PF12729)mitochondrial
205918.Psyr_0868(PF12729)ER; (mitochondrial)
205918.Psyr_4797+ER
205918.Psyr_1050+ER
205918.Psyr_3108+ER
205918.Psyr_2966+(ER)
205918.Psyr_4205(PF03538)mitochondrial; (mitochondrial)
205918.Psyr_2188+ER
205918.Psyr_2980+mitochondrial; (mitochondrial)
205918.Psyr_0905(>)ER; (ER)
205918.Psyr_0583(>)(ER); (mitochondrial)
205918.Psyr_3114(PF12729)mitochondrial
205918.Psyr_4218(PF12729)mitochondrial
205918.Psyr_1193+(ER); plastid
205918.Psyr_3348(PF12729)mitochondrial
205918.Psyr_3349(>)ER
205918.Psyr_3630+ER
205918.Psyr_4827+(ER)
205918.Psyr_3128+(ER); ER
205918.Psyr_1697+ER
205918.Psyr_3566+mitochondrial
205918.Psyr_1671+ER
205918.Psyr_0491+(ER)
205918.Psyr_3351+(PF12729)(ER)
205918.Psyr_2082+ER
205918.Psyr_2399(>)ER; (ER)
205918.Psyr_2240(PF12729)ER
205918.Psyr_2248+ER
205918.Psyr_4380+ER; (ER)
205918.Psyr_4385(PF07678)ER
205918.Psyr_1415+ER
205918.Psyr_2229+ER; (ER)
205918.Psyr_2899+(mitochondrial)
205918.Psyr_4159(<)+
205918.Psyr_3424+plastid
205918.Psyr_2600(+)(mitochondrial)
205918.Psyr_4036+(PF12255)
205918.Psyr_3515+(<)
205918.Psyr_4860(PF13276)(mitochondrial)
205918.Psyr_1256(+)(mitochondrial)
205918.Psyr_4288+plastid
205918.Psyr_2338+(plastid)
205918.Psyr_2856++
205918.Psyr_0297+(ER)
205918.Psyr_0842+(ER)
205918.Psyr_4729(+)ER
205918.Psyr_0975+(plastid)
205918.Psyr_3278+(plastid)
205918.Psyr_2587+(plastid)
205918.Psyr_2044+(PF05593)
205918.Psyr_2040(+)(PF05593)plastid
205918.Psyr_2631+(plastid)
205918.Psyr_2835(+)(ER); plastid
205918.Psyr_4403+(>)
205918.Psyr_1037++
205918.Psyr_1560++
205918.Psyr_3049(+)(mitochondrial); mitochondrial
205918.Psyr_3466+plastid
205918.Psyr_1910(>)(ER)
205918.Psyr_4071(+)ER; (ER)
205918.Psyr_0179+(PF06945)
205918.Psyr_0558(+)(mitochondrial)
205918.Psyr_3854(+)ER
205918.Psyr_2030+plastid
205918.Psyr_2141(+)mitochondrial
205918.Psyr_4248+(PF13402)
205918.Psyr_1364(+)ER
205918.Psyr_2820++
205918.Psyr_2822+(mitochondrial)
205918.Psyr_0163+plastid
205918.Psyr_1784(+)(ER)
205918.Psyr_4474+(plastid)
205918.Psyr_3924++
205918.Psyr_0753+mitochondrial
205918.Psyr_4925+(plastid)
205918.Psyr_1975(PF13276)(mitochondrial)
205918.Psyr_1972++
205918.Psyr_1150+(PF12729)
205918.Psyr_0337+plastid
205918.Psyr_4481(+)ER
205918.Psyr_0763+(mitochondrial)
205918.Psyr_3839+(>)
205918.Psyr_3497+(mitochondrial)
205918.Psyr_3943(+)ER
205918.Psyr_2305+(plastid)
205918.Psyr_1944(+)ER
205918.Psyr_1472+(mitochondrial)
205918.Psyr_0205(+)mitochondrial
205918.Psyr_2732(+)ER; (ER)
205918.Psyr_2559+(plastid)
205918.Psyr_3312(+)mitochondrial; (mitochondrial)
205918.Psyr_3317(PF13276)(mitochondrial)
205918.Psyr_3480+plastid
205918.Psyr_3553(+)ER
205918.Psyr_1219+plastid
205918.Psyr_4233+PF07217
205918.Psyr_3922++
205918.Psyr_1442(+)(mitochondrial)
205918.Psyr_4643+ER
205918.Psyr_0102++
205918.Psyr_4970+(plastid)
205918.Psyr_4885+plastid
205918.Psyr_1432(+)(mitochondrial)
205918.Psyr_1182(+)(ER)
205918.Psyr_2221+(plastid)
205918.Psyr_3595(+)(mitochondrial)
205918.Psyr_2227++
205918.Psyr_1339(+)(mitochondrial); (plastid)
205918.Psyr_4448++
205918.Psyr_0060+(mitochondrial)
205918.Psyr_1681+(plastid)
205918.Psyr_1602+(plastid)
205918.Psyr_4265+(plastid)
205918.Psyr_1211+plastid
205918.Psyr_2654(PF13276)(mitochondrial)
205918.Psyr_0252(+)(ER); plastid
205918.Psyr_4123(+)(mitochondrial); (plastid)
205918.Psyr_2754+(plastid)
205918.Psyr_0070(+)mitochondrial
205918.Psyr_1280+(plastid)
205918.Psyr_1449+(plastid)
205918.Psyr_0005(+)(ER)
205918.Psyr_0003(+)(mitochondrial)
205918.Psyr_2520(+)mitochondrial; (mitochondrial)
205918.Psyr_4516(+)(mitochondrial)
205918.Psyr_4842+
205918.Psyr_2419+
205918.Psyr_2380+
205918.Psyr_2386+
205918.Psyr_2674+
205918.Psyr_2702+
205918.Psyr_1275(PF06945)
205918.Psyr_4719(+)+
205918.Psyr_1012(+)(<)
205918.Psyr_0015+
205918.Psyr_0012+
205918.Psyr_2873+
205918.Psyr_1490(PF06884)
205918.Psyr_3502+
205918.Psyr_0867+
205918.Psyr_1727(PF06945)
205918.Psyr_0726(>)
205918.Psyr_2212+
205918.Psyr_0523(PF06293)
205918.Psyr_0527+
205918.Psyr_0525(PF06293)
205918.Psyr_0524(PF06293)
205918.Psyr_1691(<)
205918.Psyr_2770+
205918.Psyr_2776+
205918.Psyr_3428+
205918.Psyr_3939+
205918.Psyr_3737(>)
205918.Psyr_3735+
205918.Psyr_2493+
205918.Psyr_2287+
205918.Psyr_1260(+)+
205918.Psyr_4633+
205918.Psyr_4708+
205918.Psyr_5037+
205918.Psyr_4522+
205918.Psyr_4030+
205918.Psyr_4034(PF03538)
205918.Psyr_0288+
205918.Psyr_0289+
205918.Psyr_0350+
205918.Psyr_0609+
205918.Psyr_3762+
205918.Psyr_0510+
205918.Psyr_2179+
205918.Psyr_3419(+)+
205918.Psyr_3413+
205918.Psyr_3410+
205918.Psyr_4997(PF05593)
205918.Psyr_4995+
205918.Psyr_4990(PF05593)
205918.Psyr_3891+
205918.Psyr_3894+
205918.Psyr_2079+
205918.Psyr_3074+
205918.Psyr_4863+
205918.Psyr_4869(+)(mitochondrial)
205918.Psyr_1010(<)
205918.Psyr_2615+
205918.Psyr_3676(+)(plastid)
205918.Psyr_1814+
205918.Psyr_2291+
205918.Psyr_2103+
205918.Psyr_4608(PF13276)
205918.Psyr_4600+
205918.Psyr_1929+
205918.Psyr_4285+
205918.Psyr_5020+
205918.Psyr_2850+
205918.Psyr_4025+
205918.Psyr_0727+
205918.Psyr_5106(<)
205918.Psyr_2496+
205918.Psyr_0341+
205918.Psyr_0618+
205918.Psyr_3541+
205918.Psyr_4441+
205918.Psyr_4838+
205918.Psyr_0509+
205918.Psyr_0503(PF04488)
205918.Psyr_0504+
205918.Psyr_4981+
205918.Psyr_4986(PF05593)
205918.Psyr_3717+
205918.Psyr_2045+
205918.Psyr_3406+
205918.Psyr_4871+
205918.Psyr_3668+
205918.Psyr_0394+
205918.Psyr_2133+
205918.Psyr_1023+
205918.Psyr_4616(PF13276)
205918.Psyr_0999(+)(>)
205918.Psyr_0196+
205918.Psyr_0370(+)(mitochondrial)
205918.Psyr_3713(+)(ER)
205918.Psyr_1355(>)
205918.Psyr_2837+
205918.Psyr_0579+
205918.Psyr_3276+
205918.Psyr_3277+
205918.Psyr_3275(>)
205918.Psyr_3272+
205918.Psyr_3273+
205918.Psyr_3879(+)(mitochondrial)
205918.Psyr_3877+
205918.Psyr_3054+
205918.Psyr_2583+
205918.Psyr_3476+
205918.Psyr_3470+
205918.Psyr_3471+
205918.Psyr_3472+
205918.Psyr_3479+
205918.Psyr_4889(+)(PF13402)
205918.Psyr_2058+
205918.Psyr_3983(PF10462)
205918.Psyr_1076+
205918.Psyr_2900+
205918.Psyr_2128+
205918.Psyr_1179(+)(mitochondrial)
205918.Psyr_4269+
205918.Psyr_1344+
205918.Psyr_4067(+)(PF06293)
205918.Psyr_4662+
205918.Psyr_0988(PF13276)
205918.Psyr_0184+
205918.Psyr_4405+
205918.Psyr_4392+
205918.Psyr_2645+
205918.Psyr_1760+
205918.Psyr_5042+
205918.Psyr_1562(+)+
205918.Psyr_0562+
205918.Psyr_1039+
205918.Psyr_0419+
205918.Psyr_1774+
205918.Psyr_1771+
205918.Psyr_2085+
205918.Psyr_1772+
205918.Psyr_4439+
205918.Psyr_3463+
205918.Psyr_3460+
205918.Psyr_3622+
205918.Psyr_2640+
205918.Psyr_1829+
205918.Psyr_3999+
205918.Psyr_3993+
205918.Psyr_1224+
205918.Psyr_1220+
205918.Psyr_2805+
205918.Psyr_4271+
205918.Psyr_1176(PF13276)
205918.Psyr_1174+
205918.Psyr_1170+
205918.Psyr_0956+
205918.Psyr_0779+
205918.Psyr_3119+
205918.Psyr_1165+
205918.Psyr_0883+
205918.Psyr_3830+
205918.Psyr_4300+
205918.Psyr_0318+
205918.Psyr_1770+
205918.Psyr_0082(+)(plastid)
205918.Psyr_0224+
205918.Psyr_0227+
205918.Psyr_3483(+)(ER)
205918.Psyr_0794+
205918.Psyr_0420+
205918.Psyr_3486(>)
205918.Psyr_3219+
205918.Psyr_3520+
205918.Psyr_4416(>)
205918.Psyr_1517(+)(mitochondrial)
205918.Psyr_3163+
205918.Psyr_2144+
205918.Psyr_3014+
205918.Psyr_2014+
205918.Psyr_1051(PF04488)
205918.Psyr_0947+
205918.Psyr_0892(+)(mitochondrial)
205918.Psyr_1788+
205918.Psyr_0754+
205918.Psyr_1546+
205918.Psyr_1547(+)(plastid)
205918.Psyr_0096(>)
205918.Psyr_0545+
205918.Psyr_0232+
205918.Psyr_0547+
205918.Psyr_0782+
205918.Psyr_0784+
205918.Psyr_1061(+)+
205918.Psyr_0439(+)(mitochondrial)
205918.Psyr_2312+
205918.Psyr_2006(+)(mitochondrial)
205918.Psyr_2798+
205918.Psyr_1203+
205918.Psyr_2690(<)
205918.Psyr_4651+
205918.Psyr_0938(+)+
205918.Psyr_4433+
205918.Psyr_1152(<)
205918.Psyr_0931+
205918.Psyr_4554+
205918.Psyr_4328+
205918.Psyr_0336+
205918.Psyr_0338+
205918.Psyr_1559+
205918.Psyr_1058(+)(ER)
205918.Psyr_4919+
205918.Psyr_3034+
205918.Psyr_0448+
205918.Psyr_3326+
205918.Psyr_3783(<)
205918.Psyr_3838+
205918.Psyr_3167+
205918.Psyr_3017+
205918.Psyr_2543+
205918.Psyr_2789+
205918.Psyr_2302+
205918.Psyr_2309(+)(mitochondrial)
205918.Psyr_5082+
205918.Psyr_3120+
205918.Psyr_4682+
205918.Psyr_4680(PF13276)
205918.Psyr_1412(+)(>)
205918.Psyr_1417+
205918.Psyr_0929+
205918.Psyr_1879+not used
205918.Psyr_2495+
205918.Psyr_1122+
205918.Psyr_3628+
205918.Psyr_1524(+)(>)
205918.Psyr_1527+
205918.Psyr_1523+
205918.Psyr_0219+
205918.Psyr_3908+
205918.Psyr_1638+
205918.Psyr_0326+
205918.Psyr_4149(>)
205918.Psyr_0458+
205918.Psyr_3227+
205918.Psyr_3488+
205918.Psyr_2149(<)
205918.Psyr_3175(>)
205918.Psyr_1954(+)(mitochondrial)
205918.Psyr_2689+
205918.Psyr_2195+
205918.Psyr_2996+
205918.Psyr_2997+
205918.Psyr_2999+
205918.Psyr_4348(+)+
205918.Psyr_0912+
205918.Psyr_1530(+)+
205918.Psyr_0592(PF13276)
205918.Psyr_0469+
205918.Psyr_0236+
205918.Psyr_3056+
205918.Psyr_3050(>)
205918.Psyr_3810(PF13276)
205918.Psyr_3816+
205918.Psyr_3100+
205918.Psyr_3562+
205918.Psyr_4976+
205918.Psyr_2567+
205918.Psyr_3582(PF06945)
205918.Psyr_3613+
205918.Psyr_4805(PF05593)
205918.Psyr_1320(>)
205918.Psyr_1324+
205918.Psyr_1146+
205918.Psyr_1188+
205918.Psyr_1186+
205918.Psyr_1184+
205918.Psyr_1183+
205918.Psyr_1053+
205918.Psyr_1506+
205918.Psyr_0054+
205918.Psyr_2738+
205918.Psyr_0273(PF13276)
205918.Psyr_0471+
205918.Psyr_1858+
205918.Psyr_0671(>)
205918.Psyr_3113+
205918.Psyr_3112(+)(ER)
205918.Psyr_3597+
205918.Psyr_1237(>)
205918.Psyr_2658+
205918.Psyr_1335(+)(mitochondrial)
205918.Psyr_1332+
205918.Psyr_1991+
205918.Psyr_1421+
205918.Psyr_2488+
205918.Psyr_4581(<)
205918.Psyr_1041+
205918.Psyr_3820(+)(mitochondrial)
205918.Psyr_1192+
205918.Psyr_1196+
205918.Psyr_1609(>)
205918.Psyr_0647(PF05277)
205918.Psyr_0649+
205918.Psyr_4932+
205918.Psyr_2540+
205918.Psyr_3297(>)
205918.Psyr_3808+
205918.Psyr_0595(>)
205918.Psyr_3639+
205918.Psyr_3124(+)(ER)
205918.Psyr_4909+
205918.Psyr_2656+
205918.Psyr_4776+
205918.Psyr_4775+
205918.Psyr_2233(PF06945)
205918.Psyr_2235(+)(mitochondrial)
205918.Psyr_1856+
205918.Psyr_1981+
205918.Psyr_4903(>)
205918.Psyr_0105(PF13276)
205918.Psyr_4866+
205918.Psyr_4033(+)(PF05593)
205918.Psyr_0817+
205918.Psyr_0814+
205918.Psyr_0812+
205918.Psyr_0250+
205918.Psyr_1670+
205918.Psyr_0653+
205918.Psyr_0652(PF13276)
205918.Psyr_1924+
205918.Psyr_3352(+)(plastid)
205918.Psyr_3916(<)
205918.Psyr_4945+
205918.Psyr_2347(<)
205918.Psyr_4951+
205918.Psyr_3455+
205918.Psyr_0489+
205918.Psyr_2394+
205918.Psyr_2887+
205918.Psyr_4762+
205918.Psyr_2734+
205918.Psyr_4019+
205918.Psyr_0006(PF13816)
205918.Psyr_0712+
205918.Psyr_1688(<)
205918.Psyr_3722+
205918.Psyr_0536+
205918.Psyr_2265+
205918.Psyr_3929+
205918.Psyr_3435+
205918.Psyr_3724(+)(mitochondrial)
205918.Psyr_2094(+)
205918.Psyr_4245(+)
205918.Psyr_2670(+)
205918.Psyr_2676(+)
205918.Psyr_2703(+)
205918.Psyr_1274(+)
205918.Psyr_1277(+)
205918.Psyr_5000(+)
205918.Psyr_2648(+)
205918.Psyr_2002(+)
205918.Psyr_3538(+)
205918.Psyr_1387(+)
205918.Psyr_1653(+)
205918.Psyr_1492(+)
205918.Psyr_0544(+)
205918.Psyr_4043(+)
205918.Psyr_3398(+)
205918.Psyr_3391(+)
205918.Psyr_3395(+)
205918.Psyr_3394(+)
205918.Psyr_5081(+)
205918.Psyr_2254(+)
205918.Psyr_2251(+)
205918.Psyr_2468(+)
205918.Psyr_3533(+)
205918.Psyr_1865(+)
205918.Psyr_2280(+)
205918.Psyr_2117(+)
205918.Psyr_4524(+)
205918.Psyr_1396(+)
205918.Psyr_1393(+)
205918.Psyr_0738(+)
205918.Psyr_0280(+)
205918.Psyr_1483(+)
205918.Psyr_0607(+)
205918.Psyr_0608(+)
205918.Psyr_0040(+)
205918.Psyr_4156(+)
205918.Psyr_1734(+)
205918.Psyr_1736(+)
205918.Psyr_4132(+)
205918.Psyr_3043(+)
205918.Psyr_3417(+)
205918.Psyr_3411(+)
205918.Psyr_2077(+)
205918.Psyr_2472(+)
205918.Psyr_4954(+)
205918.Psyr_4020(+)
205918.Psyr_2612(+)
205918.Psyr_1812(+)
205918.Psyr_1255(+)
205918.Psyr_4605(+)
205918.Psyr_1928(+)
205918.Psyr_2013(+)
205918.Psyr_4284(+)
205918.Psyr_2872(+)
205918.Psyr_5107(+)
205918.Psyr_0508(+)
205918.Psyr_3882(+)
205918.Psyr_3063(+)
205918.Psyr_3409(+)
205918.Psyr_2443(+)
205918.Psyr_2655(+)
205918.Psyr_5127(+)
205918.Psyr_4730(+)
205918.Psyr_3661(+)
205918.Psyr_4202(+)
205918.Psyr_2153(+)
205918.Psyr_1809(+)
205918.Psyr_4721(+)
205918.Psyr_4505(+)
205918.Psyr_4509(+)
205918.Psyr_0998(+)
205918.Psyr_0195(+)
205918.Psyr_0378(+)
205918.Psyr_4278(+)
205918.Psyr_1950(+)
205918.Psyr_0574(+)
205918.Psyr_1692(+)
205918.Psyr_1501(+)
205918.Psyr_2048(+)
205918.Psyr_4882(+)
205918.Psyr_5131(+)
205918.Psyr_3695(+)
205918.Psyr_1838(+)
205918.Psyr_2909(+)
205918.Psyr_2123(+)
205918.Psyr_2124(+)
205918.Psyr_0171(+)
205918.Psyr_1343(+)
205918.Psyr_1583(+)
205918.Psyr_0775(+)
205918.Psyr_0360(+)
205918.Psyr_3513(+)
205918.Psyr_0134(+)
205918.Psyr_2481(+)
205918.Psyr_2158(+)
205918.Psyr_2152(+)
205918.Psyr_4277(+)
205918.Psyr_4674(+)
205918.Psyr_4419(+)
205918.Psyr_4417(+)
205918.Psyr_1934(+)
205918.Psyr_3421(+)
205918.Psyr_1574(+)
205918.Psyr_0550(+)
205918.Psyr_3325(+)
205918.Psyr_1418(+)
205918.Psyr_2922(+)
205918.Psyr_2924(+)
205918.Psyr_2067(+)
205918.Psyr_2810(+)
205918.Psyr_1360(+)
205918.Psyr_5069(+)
205918.Psyr_2018(+)
205918.Psyr_2827(+)
205918.Psyr_2821(+)
205918.Psyr_1144(+)
205918.Psyr_4425(+)
205918.Psyr_4429(+)
205918.Psyr_1542(+)
205918.Psyr_0098(+)
205918.Psyr_3925(+)
205918.Psyr_0789(+)
205918.Psyr_3813(+)
205918.Psyr_3201(+)
205918.Psyr_3844(+)
205918.Psyr_3025(+)
205918.Psyr_3023(+)
205918.Psyr_3118(+)
205918.Psyr_3531(+)
205918.Psyr_3532(+)
205918.Psyr_2551(+)
205918.Psyr_2957(+)
205918.Psyr_1104(+)
205918.Psyr_1977(+)
205918.Psyr_2172(+)
205918.Psyr_4654(+)
205918.Psyr_1799(+)
205918.Psyr_4748(+)
205918.Psyr_0330(+)
205918.Psyr_1330(+)
205918.Psyr_3490(+)
205918.Psyr_2947(+)
205918.Psyr_2948(+)
205918.Psyr_1941(+)
205918.Psyr_2735(+)
205918.Psyr_0320(+)
205918.Psyr_1642(+)
205918.Psyr_1630(+)
205918.Psyr_1138(+)
205918.Psyr_0689(+)
205918.Psyr_3829(+)
205918.Psyr_1321(+)
205918.Psyr_3314(+)
205918.Psyr_1216(+)
205918.Psyr_4904(+)
205918.Psyr_0037(+)
205918.Psyr_1889(+)
205918.Psyr_2751(+)
205918.Psyr_2373(+)
205918.Psyr_2719(+)
205918.Psyr_0778(+)
205918.Psyr_2192(+)
205918.Psyr_4142(+)
205918.Psyr_0214(+)
205918.Psyr_0135(+)
205918.Psyr_1080(+)
205918.Psyr_4342(+)
205918.Psyr_0680(+)
205918.Psyr_0685(+)
205918.Psyr_4794(+)
205918.Psyr_1533(+)
205918.Psyr_0269(+)
205918.Psyr_4240(+)
205918.Psyr_1623(+)
205918.Psyr_1626(+)
205918.Psyr_1886(+)
205918.Psyr_0100(+)
205918.Psyr_4766(+)
205918.Psyr_3818(+)
205918.Psyr_3819(+)
205918.Psyr_2584(+)
205918.Psyr_3365(+)
205918.Psyr_2580(+)
205918.Psyr_2565(+)
205918.Psyr_3585(+)
205918.Psyr_2749(+)
205918.Psyr_3617(+)
205918.Psyr_1143(+)
205918.Psyr_2185(+)
205918.Psyr_0124(+)
205918.Psyr_1187(+)
205918.Psyr_1500(+)
205918.Psyr_0276(+)
205918.Psyr_3979(+)
205918.Psyr_0474(+)
205918.Psyr_0670(+)
205918.Psyr_0679(+)
205918.Psyr_2427(+)
205918.Psyr_2428(+)
205918.Psyr_1786(+)
205918.Psyr_3980(+)
205918.Psyr_2515(+)
205918.Psyr_4099(+)
205918.Psyr_3599(+)
205918.Psyr_4749(+)
205918.Psyr_4216(+)
205918.Psyr_0111(+)
205918.Psyr_3790(+)
205918.Psyr_1040(+)
205918.Psyr_3949(+)
205918.Psyr_0243(+)
205918.Psyr_4808(+)
205918.Psyr_3250(+)
205918.Psyr_0696(+)
205918.Psyr_2439(+)
205918.Psyr_0112(+)
205918.Psyr_1376(+)
205918.Psyr_3905(+)
205918.Psyr_2505(+)
205918.Psyr_3073(+)
205918.Psyr_2500(+)
205918.Psyr_2726(+)
205918.Psyr_4826(+)
205918.Psyr_1368(+)
205918.Psyr_2649(+)
205918.Psyr_2650(+)
205918.Psyr_1851(+)
205918.Psyr_1853(+)
205918.Psyr_3558(+)
205918.Psyr_4227(+)
205918.Psyr_4484(+)
205918.Psyr_4480(+)
205918.Psyr_1470(+)
205918.Psyr_0254(+)
205918.Psyr_1936(+)
205918.Psyr_1194(+)
205918.Psyr_1704(+)
205918.Psyr_1705(+)
205918.Psyr_3578(+)
205918.Psyr_2203(+)
205918.Psyr_2489(+)
205918.Psyr_2759(+)
205918.Psyr_3281(+)
205918.Psyr_3358(+)
205918.Psyr_2498(+)
205918.Psyr_2276(+)
205918.Psyr_4312(+)
205918.Psyr_3911(+)
205918.Psyr_3919(+)
205918.Psyr_2530(+)
205918.Psyr_1811(+)
205918.Psyr_2408(+)
205918.Psyr_2404(+)
205918.Psyr_4837(+)
205918.Psyr_2398(+)
205918.Psyr_1846(+)
205918.Psyr_4021(+)
205918.Psyr_4167(+)
205918.Psyr_4166(+)
205918.Psyr_2965(+)
205918.Psyr_1064(+)
205918.Psyr_4081(+)
205918.Psyr_3437(+)
205918.Psyr_3727(+)
205918.Psyr_4338(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.2 (12/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.625 (13/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================