Metamenu

Effective results for Herminiimonas arsenicoxydans (eggnog40)

Summary

Number of putative secreted proteins: 89
- Predicted by T4SEpre: 89
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 15 proteins (0 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
204773.HEAR2045+(PF12344)mitochondrial; (mitochondrial)
204773.HEAR3364+ER
204773.HEAR3049+(mitochondrial)
204773.HEAR1553+(mitochondrial)
204773.HEAR1234+mitochondrial
204773.HEAR1052(PF04343)(mitochondrial)
204773.HEAR3090+ER
204773.HEAR1831+ER
204773.HEAR1603+ER
204773.HEAR1358+ER
204773.HEAR3143+mitochondrial; (mitochondrial)
204773.HEAR0924+(ER); ER
204773.HEAR2690+ER
204773.HEAR2977+ER
204773.HEAR2408+ER
204773.HEAR3059+ER
204773.HEAR2685+ER
204773.HEAR2046(PF04343)mitochondrial
204773.HEAR2218+ER
204773.HEAR3142+(mitochondrial)
204773.HEAR1940+ER
204773.HEAR3259+ER
204773.HEAR1344+(ER)
204773.HEAR1202+ER
204773.HEAR2514+ER
204773.HEAR2375+(plastid)
204773.HEAR1951+(mitochondrial)
204773.HEAR3283+(ER)
204773.HEAR1000+(mitochondrial)
204773.HEAR0510+(ER)
204773.HEAR2063+(plastid)
204773.HEAR1168+(mitochondrial)
204773.HEAR0094+(ER)
204773.HEAR2768+(mitochondrial)
204773.HEAR1903+
204773.HEAR1672+
204773.HEAR0514(PF09588)
204773.HEAR0194+
204773.HEAR0608+
204773.HEAR0988+
204773.HEAR2744+
204773.HEAR3432+
204773.HEAR0676(PF04343)
204773.HEAR2358+
204773.HEAR3081+
204773.HEAR0289+
204773.HEAR0443+
204773.HEAR2721+
204773.HEAR0472(PF13148)
204773.HEAR0124+
204773.HEAR1836(PF04343)
204773.HEAR2623+
204773.HEAR1857(PF13148)
204773.HEAR1850(PF09588)
204773.HEAR1851+
204773.HEAR2188+
204773.HEAR1355(PF01668)
204773.HEAR0921+
204773.HEAR0035+
204773.HEAR1509+
204773.HEAR2243(PF12344)
204773.HEAR3224+
204773.HEAR1192+
204773.HEAR1407+
204773.HEAR0567+
204773.HEAR3201+
204773.HEAR2683+
204773.HEAR3207+
204773.HEAR0598+
204773.HEAR0686(PF13148)
204773.HEAR2215+
204773.HEAR2214+
204773.HEAR2458+
204773.HEAR0366+
204773.HEAR0788+
204773.HEAR2267+
204773.HEAR2021+
204773.HEAR0797+
204773.HEAR0158(PF16983)
204773.HEAR1200+
204773.HEAR0503+
204773.HEAR2308(PF09588)
204773.HEAR2932+
204773.HEAR1451+
204773.HEAR2559+
204773.HEAR2089+
204773.HEAR0886+
204773.HEAR1460(PF01668)
204773.HEAR1662+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================