Effective results for Yersinia pestis KIM10+ (eggnog40)
Summary
Number of putative secreted proteins: 711
- Predicted by EffectiveT3: 201 (high confidence), 277 (low confidence)
- Predicted by EffectiveCCBD: 31 within, 23 before, 38 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 172 proteins (84 high, 88 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
187410.y1344 | + | (PF03797) | (mitochondrial) | ||
187410.y1857 | + | (<) | (mitochondrial); (plastid) | ||
187410.y3196 | + | (mitochondrial) | |||
187410.y2494 | (>) | ER | |||
187410.y1859 | + | (PF00345) | ER | ||
187410.y0243 | (>) | (ER) | |||
187410.y3241 | (>) | mitochondrial | |||
187410.y3246 | (<) | ER | |||
187410.y2742 | PF00665 PF02796 | (plastid) | |||
187410.y1246 | + | ER | |||
187410.y1245 | + | (mitochondrial) | |||
187410.y0043 | PF00665 PF02796 | (plastid) | |||
187410.y3423 | (>) | (mitochondrial) | |||
187410.y0305 | PF00665 | (mitochondrial) | |||
187410.y3407 | PF00665 PF02796 | (plastid) | |||
187410.y3404 | + | ER | |||
187410.y3650 | + | (mitochondrial) | |||
187410.y1870 | (PF00345) | ER | |||
187410.y1873 | (PF00345) | mitochondrial | |||
187410.y2392 | (PF00345) | ER | |||
187410.y0692 | (PF13518) | mitochondrial | |||
187410.y0456 | PF00665 PF02796 | (plastid) | |||
187410.y1916 | + | (mitochondrial) | |||
187410.y1271 | (PF02112) | mitochondrial | |||
187410.Y1030 | + | (mitochondrial); plastid | |||
187410.y3647 | + | mitochondrial; (mitochondrial) | |||
187410.y2744 | (+) | (>) | mitochondrial | ||
187410.y1868 | (>) | ER | |||
187410.y1319 | PF00665 PF02796 | (plastid) | |||
187410.y2590 | (>) | ER | |||
187410.y0735 | (<) | ER | |||
187410.y1005 | PF00665 PF02796 | (plastid) | |||
187410.y3350 | (PF03400) | mitochondrial; (mitochondrial) | |||
187410.y3356 | (PF03400) | mitochondrial; (mitochondrial) | |||
187410.y1265 | (>) | ER | |||
187410.y3421 | + | (mitochondrial) | |||
187410.y1467 | + | ER | |||
187410.y0506 | PF00665 PF02796 | (plastid) | |||
187410.y1854 | PF00665 PF02796 | (plastid) | |||
187410.y3186 | (>) | ER | |||
187410.y0436 | (>) | ER | |||
187410.y1671 | PF00665 PF02796 | (plastid) | |||
187410.y2343 | PF00665 PF02796 | (plastid) | |||
187410.y1454 | (+) | (PF03797) | ER | ||
187410.y3798 | PF00665 PF02796 | (plastid) | |||
187410.y2578 | PF00665 PF02796 | (plastid) | |||
187410.y2485 | + | (mitochondrial); plastid | |||
187410.y2152 | (>) | (mitochondrial) | |||
187410.y2390 | (PF00577) | ER | |||
187410.y2022 | PF00665 PF02796 | (plastid) | |||
187410.y3573 | (PF03797) | ER | |||
187410.y0352 | + | ER | |||
187410.y3614 | PF00665 PF02796 | (plastid) | |||
187410.y1940 | (>) | ER | |||
187410.y1942 | PF00665 PF02796 | (plastid) | |||
187410.y3149 | PF00665 PF02796 | (plastid) | |||
187410.y1122 | PF00665 PF02796 | (plastid) | |||
187410.y2143 | PF00665 PF02796 | (plastid) | |||
187410.y2389 | (PF00345) | ER | |||
187410.y1541 | (PF00345) | ER | |||
187410.y3818 | PF00665 PF02796 | (plastid) | |||
187410.y4065 | (PF13518) | ER | |||
187410.y4062 | (PF00577) | ER | |||
187410.y1858 | (PF00577) | ER | |||
187410.y1600 | (<) | ER | |||
187410.y1134 | (PF03797) | ER | |||
187410.y1425 | (<) | ER | |||
187410.y1550 | PF00665 PF02796 | (plastid) | |||
187410.y0610 | + | (mitochondrial); (plastid) | |||
187410.Y1055 | PF00665 PF02796 | (plastid) | |||
187410.y2834 | (<) | ER; (ER) | |||
187410.y1884 | (>) | ER | |||
187410.y1977 | + | ER | |||
187410.y0284 | PF00665 PF02796 | (plastid) | |||
187410.y0753 | PF00665 PF02796 | (plastid) | |||
187410.y0597 | (PF03272) | mitochondrial | |||
187410.y2269 | (>) | mitochondrial | |||
187410.y2267 | (PF13332) | (ER) | |||
187410.y3959 | + | (mitochondrial); plastid | |||
187410.y3480 | (PF00577) | (ER) | |||
187410.y0562 | (PF00577) | ER | |||
187410.y0293 | + | (mitochondrial) | |||
187410.y3213 | PF00665 PF02796 | (plastid) | |||
187410.y0961 | + | mitochondrial | |||
187410.Y1098 | (PF00345) | ER | |||
187410.Y1099 | (PF00577) | ER | |||
187410.Y1093 | PF00665 PF02796 | (plastid) | |||
187410.y1217 | PF00665 PF02796 | (plastid) | |||
187410.y0350 | (PF00577) | mitochondrial | |||
187410.y0351 | (PF00345) | (ER) | |||
187410.y0356 | (>) | (mitochondrial); (plastid) | |||
187410.y3455 | + | mitochondrial; plastid | |||
187410.y3732 | PF00665 PF02796 | (plastid) | |||
187410.y0643 | PF00665 PF02796 | (plastid) | |||
187410.y4107 | (PF13518) | (ER); plastid | |||
187410.y0139 | (>) | ER | |||
187410.y2867 | + | ER; (ER) | |||
187410.y3844 | + | (>) | |||
187410.y4031 | PF00665 PF02796 | (plastid) | |||
187410.y0348 | (PF00345) | mitochondrial; (mitochondrial) | |||
187410.y3445 | + | mitochondrial; (mitochondrial) | |||
187410.y3440 | (PF13518) | mitochondrial | |||
187410.y2880 | (PF00577) | ER | |||
187410.y2883 | (>) | ER | |||
187410.y1834 | (PF03797) | ER | |||
187410.y0653 | (>) | ER | |||
187410.y0655 | + | mitochondrial; (mitochondrial) | |||
187410.y1346 | (PF03797) | ER | |||
187410.y1345 | (PF03797) | ER | |||
187410.y1348 | (PF08964) | ER | |||
187410.y0906 | PF00665 PF02796 | (plastid) | |||
187410.y0330 | (+) | + | (mitochondrial) | ||
187410.y3479 | (PF00345) | ER | |||
187410.y2895 | (<) | mitochondrial | |||
187410.y0937 | PF00665 PF02796 | (plastid) | |||
187410.y2226 | PF00665 PF02796 | (plastid) | |||
187410.y3867 | (>) | ER | |||
187410.y2793 | PF00665 PF02796 | (plastid) | |||
187410.y3462 | (PF09811) | mitochondrial | |||
187410.y2411 | PF00665 PF02796 | (plastid) | |||
187410.y0475 | PF00665 PF02796 | (plastid) | |||
187410.y3090 | PF00665 PF02796 | (plastid) | |||
187410.y3410 | (+) | mitochondrial | |||
187410.y0306 | (PF13518) | (mitochondrial) | |||
187410.y2682 | (+) | (mitochondrial) | |||
187410.y0694 | (+) | (mitochondrial) | |||
187410.y1314 | (+) | mitochondrial | |||
187410.y2692 | + | (plastid) | |||
187410.y2098 | + | + | |||
187410.y2350 | (+) | (mitochondrial) | |||
187410.y3355 | (PF03400) | (mitochondrial) | |||
187410.y0198 | + | (plastid) | |||
187410.y3291 | + | (PF13924) | |||
187410.y0987 | + | (plastid) | |||
187410.y2010 | (+) | (mitochondrial) | |||
187410.y0538 | + | + | |||
187410.y1044 | (>) | (ER) | |||
187410.y0224 | (+) | mitochondrial | |||
187410.y0228 | (+) | ER | |||
187410.y1146 | + | (plastid) | |||
187410.y2397 | + | (ER) | |||
187410.y0886 | (+) | ER | |||
187410.y3429 | (PF03797) | (mitochondrial) | |||
187410.y0701 | (<) | ER; not used | |||
187410.y2968 | (+) | ER | |||
187410.y4064 | + | ||||
187410.y3772 | + | (plastid) | |||
187410.y1602 | + | (plastid) | |||
187410.Y1069 | + | (<) | |||
187410.y1412 | (PF07720) | (mitochondrial) | |||
187410.y1397 | + | (<) | |||
187410.y0110 | PF00665 | (ER) | |||
187410.y0112 | (+) | mitochondrial | |||
187410.y0567 | + | (PF03797) | |||
187410.y3801 | (>) | (plastid) | |||
187410.y2293 | + | + | |||
187410.y3104 | (+) | mitochondrial | |||
187410.y2180 | (+) | ER | |||
187410.y2858 | + | plastid | |||
187410.y2982 | + | (plastid) | |||
187410.y3452 | + | (plastid) | |||
187410.y3453 | + | + | |||
187410.y3139 | (+) | (mitochondrial); mitochondrial | |||
187410.y0394 | (+) | mitochondrial; (mitochondrial) | |||
187410.y2465 | + | plastid | |||
187410.y1370 | (+) | (mitochondrial) | |||
187410.y3591 | + | (PF03797) | |||
187410.y3845 | (+) | (PF03797) | (mitochondrial) | ||
187410.y1690 | + | (mitochondrial) | |||
187410.y1525 | + | (plastid) | |||
187410.y0240 | (<) | (ER) | |||
187410.y0242 | + | (plastid) | |||
187410.y1601 | + | (mitochondrial) | |||
187410.y0678 | (+) | (ER) | |||
187410.y3257 | (+) | mitochondrial; (mitochondrial) | |||
187410.y2237 | + | (ER) | |||
187410.y3895 | PF00665 | ||||
187410.y3896 | (PF13518) | ||||
187410.y3892 | + | ||||
187410.y0316 | + | ||||
187410.y0314 | + | ||||
187410.y1347 | (+) | (plastid) | |||
187410.y1697 | (PF13332) | ||||
187410.y1804 | + | ||||
187410.y1803 | (+) | (mitochondrial) | |||
187410.y2426 | (>) | ||||
187410.y2424 | (PF00872) | ||||
187410.y2425 | (PF00872) | ||||
187410.y0687 | (<) | ||||
187410.y0681 | + | ||||
187410.y3799 | PF01695 | ||||
187410.y1334 | (+) | (>) | |||
187410.y3248 | + | not used | |||
187410.y3552 | (<) | not used | |||
187410.y3084 | + | ||||
187410.y2207 | (>) | ||||
187410.y2205 | + | ||||
187410.y3334 | + | ||||
187410.y3339 | (+) | (mitochondrial) | |||
187410.y2743 | PF01695 | ||||
187410.y0869 | + | ||||
187410.y1445 | + | not used | |||
187410.y0047 | + | ||||
187410.y0042 | PF01695 | ||||
187410.y3400 | + | ||||
187410.y3409 | + | not used | |||
187410.y3408 | PF01695 | ||||
187410.y3657 | + | ||||
187410.y1871 | (PF00577) | ||||
187410.y2436 | PF00665 | ||||
187410.y0693 | PF00665 | ||||
187410.y0457 | PF01695 | ||||
187410.y1907 | (+) | (mitochondrial); not used | |||
187410.y1658 | + | ||||
187410.y2327 | + | ||||
187410.y2323 | (PF00872) | ||||
187410.y1019 | + | ||||
187410.y2218 | + | ||||
187410.y2210 | (PF00872) | ||||
187410.y1492 | + | ||||
187410.y1235 | + | ||||
187410.y1477 | + | ||||
187410.y2106 | + | ||||
187410.y2924 | (+) | (ER) | |||
187410.y3439 | PF00665 | ||||
187410.y3505 | + | not used | |||
187410.y0518 | + | ||||
187410.y1644 | + | ||||
187410.y0734 | (+) | (plastid) | |||
187410.y0731 | + | not used | |||
187410.y1006 | PF01695 | ||||
187410.y1268 | + | ||||
187410.y0994 | (>) | ||||
187410.y2175 | + | ||||
187410.y3428 | (PF03797) | ||||
187410.y2914 | (+) | (mitochondrial) | |||
187410.y0214 | + | ||||
187410.y0505 | PF01695 | ||||
187410.y0501 | (<) | ||||
187410.y1853 | PF01695 | ||||
187410.y3740 | + | ||||
187410.y0843 | (PF13518) | ||||
187410.y1670 | PF01695 | ||||
187410.y2342 | PF01695 | ||||
187410.y2580 | (PF00872) | ||||
187410.y0725 | + | ||||
187410.y1075 | + | ||||
187410.y3368 | + | ||||
187410.y3369 | + | ||||
187410.y3169 | (+) | plastid | |||
187410.y1295 | (>) | ||||
187410.Y1094 | PF01695 | ||||
187410.y0183 | (PF03538) | ||||
187410.y0185 | (+) | (PF12255) | |||
187410.Y1015 | + | ||||
187410.y2909 | + | ||||
187410.y2903 | + | ||||
187410.y0011 | + | ||||
187410.y3613 | + | not used | |||
187410.y1843 | + | ||||
187410.y3126 | + | ||||
187410.y3193 | (+) | ER; not used | |||
187410.y0402 | (+) | (PF03272) | |||
187410.y2892 | + | ||||
187410.y2371 | + | ||||
187410.y3285 | + | ||||
187410.y2577 | PF01695 | ||||
187410.y3379 | + | not used | |||
187410.y2481 | + | ||||
187410.y2151 | (PF00872) | ||||
187410.y2398 | + | ||||
187410.y1594 | + | ||||
187410.Y1007 | + | ||||
187410.y2029 | + | ||||
187410.y2021 | PF01695 | ||||
187410.y2069 | + | ||||
187410.y2913 | + | ||||
187410.y0157 | + | ||||
187410.y0410 | + | ||||
187410.y0412 | (<) | ||||
187410.y0239 | + | ||||
187410.y3579 | (PF13332) | ||||
187410.y3578 | (+) | (PF13332) | not used | ||
187410.y3616 | (<) | ||||
187410.y3615 | PF01695 | ||||
187410.y0037 | + | ||||
187410.y0036 | + | ||||
187410.y3764 | + | ||||
187410.y1941 | PF01695 | ||||
187410.y1947 | + | ||||
187410.y2561 | + | ||||
187410.y0707 | + | ||||
187410.y1059 | + | ||||
187410.y3387 | (PF13518) | ||||
187410.y3388 | PF00665 | ||||
187410.y1616 | (PF00872) | ||||
187410.y1121 | PF01695 | ||||
187410.y2144 | PF01695 | ||||
187410.y2383 | (+) | (plastid) | |||
187410.y0897 | + | ||||
187410.y0891 | + | ||||
187410.y1542 | (PF00872) | ||||
187410.y2038 | (PF00872) | ||||
187410.y2967 | + | ||||
187410.y0149 | + | ||||
187410.y3819 | PF01695 | ||||
187410.y3544 | + | not used | |||
187410.y4066 | PF00665 | ||||
187410.y4060 | (PF00345) | ||||
187410.y4061 | (PF00577) | ||||
187410.y0553 | + | ||||
187410.y2706 | + | ||||
187410.y2708 | (PF13924) | ||||
187410.y3698 | + | ||||
187410.y2634 | + | ||||
187410.y1950 | (+) | (>) | |||
187410.y1738 | + | ||||
187410.y3397 | + | ||||
187410.y3146 | + | ||||
187410.y3399 | + | ||||
187410.y3155 | + | ||||
187410.y3150 | PF01695 | ||||
187410.y0958 | (+) | (ER) | |||
187410.y1132 | (PF00872) | ||||
187410.y1559 | (+) | (plastid) | |||
187410.y1558 | (<) | ||||
187410.y1551 | PF01695 | ||||
187410.Y1062 | (PF00872) | ||||
187410.y3974 | + | ||||
187410.y2953 | + | ||||
187410.y2951 | + | ||||
187410.y2513 | + | ||||
187410.y4077 | + | ||||
187410.y3023 | + | ||||
187410.y2739 | + | ||||
187410.y2734 | + | ||||
187410.y0546 | + | ||||
187410.y0304 | + | ||||
187410.y3225 | + | ||||
187410.y3709 | + | ||||
187410.y2606 | (PF00872) | ||||
187410.y2605 | + | ||||
187410.Y1025.S | (+) | (mitochondrial) | |||
187410.y2546 | + | ||||
187410.y2540 | + | ||||
187410.y3016 | + | ||||
187410.y1145 | + | ||||
187410.Y1054 | PF01695 | ||||
187410.Y1058 | + | ||||
187410.y2054 | + | ||||
187410.y3292 | + | ||||
187410.y3943 | + | not used | |||
187410.y3946 | + | ||||
187410.y3499 | + | ||||
187410.y2942 | (>) | ||||
187410.y0167 | + | ||||
187410.y2836 | (PF03059) | ||||
187410.y0576 | + | ||||
187410.y1889 | (PF00872) | ||||
187410.y0379 | + | ||||
187410.y3719 | + | not used | |||
187410.y3715 | (>) | ||||
187410.y2612 | + | ||||
187410.y1971 | + | ||||
187410.y0282 | (+) | (PF13518) | |||
187410.y0283 | PF00665 | ||||
187410.y0285 | PF01695 | ||||
187410.y2531 | + | ||||
187410.y0752 | PF01695 | ||||
187410.y0595 | (PF03400) | ||||
187410.y0590 | + | ||||
187410.y3131 | (+) | (mitochondrial) | |||
187410.y1157 | + | ||||
187410.y1390 | (>) | ||||
187410.y1392 | + | ||||
187410.y2191 | + | ||||
187410.y1716 | (PF08950) | ||||
187410.y1711 | + | ||||
187410.y2961 | (+) | + | |||
187410.y1082 | + | ||||
187410.y0111 | PF01695 | ||||
187410.y1459 | (+) | (mitochondrial) | |||
187410.y0021 | (PF13332) | ||||
187410.y0563 | (+) | (PF00345) | |||
187410.y3728 | + | ||||
187410.y2660 | (<) | ||||
187410.y0291 | + | ||||
187410.y3032 | + | ||||
187410.y3802 | (>) | ||||
187410.y3451 | + | ||||
187410.y2299 | (+) | PF00665 | |||
187410.y2456 | (<) | ||||
187410.y3817 | (PF00872) | ||||
187410.y0633 | + | ||||
187410.y1169 | (<) | not used | |||
187410.y1361 | + | ||||
187410.y2184 | (PF00872) | ||||
187410.y2186 | + | ||||
187410.y3212 | PF01695 | ||||
187410.y3210 | (PF03797) | ||||
187410.y1509 | + | not used | |||
187410.y2078 | + | ||||
187410.y0966 | (>) | ||||
187410.y1216 | PF01695 | ||||
187410.y1883 | (+) | (plastid) | |||
187410.y2853 | + | ||||
187410.y3588 | + | ||||
187410.y0353 | (PF00872) | ||||
187410.y3733 | PF01695 | ||||
187410.y2675 | (PF00872) | ||||
187410.y2258 | + | ||||
187410.y1400 | + | ||||
187410.y2467 | (+) | + | |||
187410.y0642 | PF01695 | ||||
187410.y1371 | (PF00872) | ||||
187410.y2672 | (>) | ||||
187410.y1379 | + | ||||
187410.y0824 | + | ||||
187410.y1519 | + | ||||
187410.Y1086 | (<) | ||||
187410.y1194 | + | ||||
187410.y1715 | + | ||||
187410.y0135 | + | ||||
187410.y4108 | PF00665 | ||||
187410.y3595 | (>) | ||||
187410.y4030 | PF01695 | ||||
187410.y0349 | + | ||||
187410.y3446 | + | ||||
187410.y3441 | + | ||||
187410.y2881 | (PF00345) | ||||
187410.y1084 | + | ||||
187410.y2507 | (+) | (plastid) | |||
187410.y2705 | + | ||||
187410.y1839 | + | ||||
187410.y1832 | + | ||||
187410.y2478 | + | ||||
187410.y2475 | + | ||||
187410.y2553 | + | ||||
187410.y1743 | (PF00872) | ||||
187410.y1748 | (PF00872) | ||||
187410.y3460 | + | ||||
187410.y0905 | PF01695 | ||||
187410.y3906 | (+) | (plastid) | |||
187410.y3905 | + | ||||
187410.y0792 | + | ||||
187410.y4136 | (<) | ||||
187410.y2874 | + | ||||
187410.y2878 | + | ||||
187410.y3874 | (+) | (mitochondrial); not used | |||
187410.y0014 | + | not used | |||
187410.y0016 | + | ||||
187410.y0338 | + | ||||
187410.y0334 | (+) | (mitochondrial) | |||
187410.y1350 | + | ||||
187410.y1689 | + | ||||
187410.y2313 | + | ||||
187410.y2318 | (>) | ||||
187410.y3262 | (+) | plastid | |||
187410.y0797 | + | ||||
187410.y1532 | (+) | (PF11397) | |||
187410.y1535 | + | ||||
187410.y0117 | (+) | (ER) | |||
187410.y0936 | PF01695 | ||||
187410.y2225 | PF01695 | ||||
187410.y2777 | (+) | + | |||
187410.y2108 | + | ||||
187410.y1220 | + | ||||
187410.y4122 | (>) | ||||
187410.y2501 | + | ||||
187410.y2500 | + | not used | |||
187410.y2508 | + | ||||
187410.y4011 | + | not used | |||
187410.y0925 | + | ||||
187410.y2794 | PF01695 | ||||
187410.y0326 | + | ||||
187410.y0491 | + | ||||
187410.y0495 | + | ||||
187410.y0258 | + | not used | |||
187410.y0789 | + | ||||
187410.y2410 | PF01695 | ||||
187410.y3781 | (+) | (plastid) | |||
187410.y0476 | PF01695 | ||||
187410.y0471 | + | ||||
187410.y1320 | PF01695 | ||||
187410.y1590 | + | ||||
187410.y3091 | PF01695 | ||||
187410.y3288 | + | ||||
187410.y1781 | (PF00872) | ||||
187410.y2232 | + | ||||
187410.y3327 | + | ||||
187410.y2123 | + | ||||
187410.y0319 | (+) | ||||
187410.y0262 | (+) | ||||
187410.y0261 | (+) | ||||
187410.y3525 | (+) | ||||
187410.y3064 | (+) | ||||
187410.y3067 | (+) | ||||
187410.y3066 | (+) | ||||
187410.y1805 | (+) | ||||
187410.y2420 | (+) | not used | |||
187410.y3794 | (+) | ||||
187410.y0447 | (+) | ||||
187410.y3249 | (+) | ||||
187410.y1026 | (+) | ||||
187410.y1244 | (+) | ||||
187410.y4141 | (+) | ||||
187410.y2937 | (+) | ||||
187410.y2938 | (+) | ||||
187410.y3403 | (+) | ||||
187410.y0272 | (+) | ||||
187410.y1622 | (+) | ||||
187410.y3537 | (+) | ||||
187410.y3533 | (+) | ||||
187410.y2396 | (+) | ||||
187410.y0743 | (+) | ||||
187410.y3551 | (+) | ||||
187410.y2434 | (+) | not used | |||
187410.y1901 | (+) | ||||
187410.y0023 | (+) | ||||
187410.y1011 | (+) | not used | |||
187410.y3109 | (+) | ||||
187410.y3436 | (+) | ||||
187410.y2694 | (+) | ||||
187410.y2690 | (+) | ||||
187410.y0200 | (+) | not used | |||
187410.y3508 | (+) | ||||
187410.y0517 | (+) | ||||
187410.y1863 | (+) | ||||
187410.y3144 | (+) | ||||
187410.y2597 | (+) | not used | |||
187410.y2594 | (+) | not used | |||
187410.y1009 | (+) | ||||
187410.y0992 | (+) | ||||
187410.y0997 | (+) | ||||
187410.y1460 | (+) | ||||
187410.y0190 | (+) | ||||
187410.y0191 | + | ||||
187410.y1762 | (+) | ||||
187410.y1765 | (+) | ||||
187410.y3427 | (+) | ||||
187410.y2188 | (+) | ||||
187410.y1469 | (+) | ||||
187410.y2349 | (+) | ||||
187410.y2585 | (+) | ||||
187410.y3925 | (+) | ||||
187410.y0985 | (+) | ||||
187410.y1584 | (+) | ||||
187410.y0187 | (+) | ||||
187410.y0229 | (+) | ||||
187410.y3567 | (+) | ||||
187410.y3568 | (+) | ||||
187410.y1847 | (+) | ||||
187410.y1632 | (+) | ||||
187410.y1930 | (+) | ||||
187410.y1932 | (+) | ||||
187410.y2372 | (+) | ||||
187410.y2572 | (+) | not used | |||
187410.y3372 | (+) | not used | |||
187410.y2480 | (+) | ||||
187410.y1661 | (+) | ||||
187410.y1284 | (+) | ||||
187410.y1289 | (+) | ||||
187410.y2975 | (+) | ||||
187410.y2976 | (+) | ||||
187410.y3853 | (+) | ||||
187410.y3577 | (+) | ||||
187410.y3574 | (+) | not used | |||
187410.y0520 | (+) | ||||
187410.y2715 | (+) | ||||
187410.y2621 | (+) | ||||
187410.y1352 | (+) | ||||
187410.y3381 | (+) | ||||
187410.y3383 | (+) | ||||
187410.y1610 | (+) | ||||
187410.y0896 | (+) | ||||
187410.y1546 | (+) | ||||
187410.y2984 | (+) | ||||
187410.y3458 | (+) | ||||
187410.Y1102 | (+) | ||||
187410.y2962 | (+) | not used | |||
187410.y1053 | (+) | ||||
187410.y3607 | (+) | ||||
187410.y0391 | (+) | ||||
187410.y3306 | (+) | ||||
187410.y2637 | (+) | ||||
187410.y2941 | (+) | ||||
187410.y0426 | (+) | ||||
187410.y1992 | (+) | ||||
187410.y0953 | (+) | ||||
187410.y1136 | (+) | ||||
187410.y4091 | (+) | ||||
187410.y4096 | (+) | ||||
187410.y1125 | (+) | ||||
187410.y3979 | (+) | ||||
187410.y0176 | (+) | ||||
187410.y3807 | (+) | ||||
187410.y4079 | (+) | ||||
187410.y1896 | (+) | ||||
187410.y3828 | (+) | ||||
187410.y2542 | (+) | ||||
187410.y1707 | (+) | not used | |||
187410.y1708 | (+) | not used | |||
187410.y0268 | (+) | ||||
187410.y1634 | (+) | ||||
187410.y3234 | (+) | ||||
187410.y3231 | (+) | ||||
187410.y1563 | (+) | ||||
187410.Y1051 | (+) | ||||
187410.y1097 | (+) | ||||
187410.y3940 | (+) | ||||
187410.y0160 | (+) | ||||
187410.y3839 | (+) | ||||
187410.y1078 | (+) | ||||
187410.y1130 | (+) | ||||
187410.y0574 | (+) | ||||
187410.y1073 | (+) | not used | |||
187410.y2862 | (+) | ||||
187410.y3004 | (+) | ||||
187410.y0754 | (+) | ||||
187410.y0755 | (+) | ||||
187410.y0624 | (+) | ||||
187410.y0625 | (+) | ||||
187410.y2757 | (+) | ||||
187410.y1875 | (+) | ||||
187410.y4057 | (+) | ||||
187410.y0024 | (+) | ||||
187410.y2498 | (+) | ||||
187410.y2999 | (+) | ||||
187410.y0363 | (+) | ||||
187410.y3726 | (+) | ||||
187410.y0547 | (+) | ||||
187410.y3729 | (+) | ||||
187410.y0299 | (+) | ||||
187410.y3033 | (+) | ||||
187410.y2819 | (+) | ||||
187410.y0639 | (+) | ||||
187410.y2182 | (+) | ||||
187410.y1900 | (+) | ||||
187410.y1502 | (+) | ||||
187410.y1653 | (+) | ||||
187410.y0960 | (+) | ||||
187410.y3928 | (+) | ||||
187410.Y1090 | (+) | ||||
187410.Y1097 | (+) | ||||
187410.y3926 | (+) | ||||
187410.y1218 | (+) | ||||
187410.y1188 | (+) | ||||
187410.y3851 | (+) | ||||
187410.y4021 | (+) | ||||
187410.y4028 | (+) | ||||
187410.y2622 | (+) | ||||
187410.y3738 | (+) | ||||
187410.y1996 | (+) | ||||
187410.y3027 | (+) | ||||
187410.y3021 | (+) | ||||
187410.y0559 | (+) | ||||
187410.y1173 | (+) | ||||
187410.y0826 | (+) | ||||
187410.y0821 | (+) | ||||
187410.y0918 | (+) | ||||
187410.Y1083 | (+) | ||||
187410.y3583 | (+) | ||||
187410.y3590 | (+) | ||||
187410.y3592 | (+) | ||||
187410.y3175 | (+) | ||||
187410.y4038 | (+) | ||||
187410.y3442 | (+) | ||||
187410.y2887 | (+) | ||||
187410.y1087 | (+) | ||||
187410.y2509 | (+) | ||||
187410.y0651 | (+) | ||||
187410.y1699 | (+) | not used | |||
187410.y3903 | + | ||||
187410.y4137 | (+) | ||||
187410.y2877 | (+) | ||||
187410.y2876 | (+) | ||||
187410.y1990 | (+) | ||||
187410.y1037 | (+) | ||||
187410.y0487 | (+) | ||||
187410.y2898 | (+) | ||||
187410.y3041 | (+) | ||||
187410.y2761 | (+) | ||||
187410.y0535 | (+) | ||||
187410.y0602 | (+) | ||||
187410.y0462 | (+) | ||||
187410.y1623 | (+) | ||||
187410.y1684 | (+) | ||||
187410.y2316 | (+) | ||||
187410.y2310 | (+) | ||||
187410.y1536 | (+) | ||||
187410.y2130 | (+) | ||||
187410.y4127 | (+) | ||||
187410.y0799 | (+) | ||||
187410.y3866 | (+) | ||||
187410.y4015 | (+) | ||||
187410.y0928 | (+) | ||||
187410.y3751 | (+) | ||||
187410.y3463 | (+) | ||||
187410.y3438 | (+) | ||||
187410.y0490 | (+) | ||||
187410.y4120 | (+) | ||||
187410.y3430 | (+) | ||||
187410.y0786 | (+) | ||||
187410.y1817 | (+) | ||||
187410.y3096 | (+) | ||||
187410.y2476 | (+) | ||||
187410.y2235 | (+) | ||||
187410.y3324 | (+) | ||||
187410.y3325 | (+) | ||||
187410.y2127 | (+) | ||||
187410.y0922 | (+) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
- EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
- EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: YES (FDR = 12.5 %)
Estimated copy number = 1.5 (15/10 KEGG proteins)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 3.25 (26/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.5 (15/10 KEGG proteins)
Estimated copy number = 3.25 (26/8 KEGG proteins)