Effective results for Yersinia pestis KIM10+ (eggnog40)

Summary

Number of putative secreted proteins: 711
- Predicted by EffectiveT3: 201 (high confidence), 277 (low confidence)
- Predicted by EffectiveCCBD: 31 within, 23 before, 38 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 172 proteins (84 high, 88 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
187410.y1344+(PF03797)(mitochondrial)
187410.y1857+(<)(mitochondrial); (plastid)
187410.y3196+(mitochondrial)
187410.y2494(>)ER
187410.y1859+(PF00345)ER
187410.y0243(>)(ER)
187410.y3241(>)mitochondrial
187410.y3246(<)ER
187410.y2742PF00665 PF02796(plastid)
187410.y1246+ER
187410.y1245+(mitochondrial)
187410.y0043PF00665 PF02796(plastid)
187410.y3423(>)(mitochondrial)
187410.y0305PF00665(mitochondrial)
187410.y3407PF00665 PF02796(plastid)
187410.y3404+ER
187410.y3650+(mitochondrial)
187410.y1870(PF00345)ER
187410.y1873(PF00345)mitochondrial
187410.y2392(PF00345)ER
187410.y0692(PF13518)mitochondrial
187410.y0456PF00665 PF02796(plastid)
187410.y1916+(mitochondrial)
187410.y1271(PF02112)mitochondrial
187410.Y1030+(mitochondrial); plastid
187410.y3647+mitochondrial; (mitochondrial)
187410.y2744(+)(>)mitochondrial
187410.y1868(>)ER
187410.y1319PF00665 PF02796(plastid)
187410.y2590(>)ER
187410.y0735(<)ER
187410.y1005PF00665 PF02796(plastid)
187410.y3350(PF03400)mitochondrial; (mitochondrial)
187410.y3356(PF03400)mitochondrial; (mitochondrial)
187410.y1265(>)ER
187410.y3421+(mitochondrial)
187410.y1467+ER
187410.y0506PF00665 PF02796(plastid)
187410.y1854PF00665 PF02796(plastid)
187410.y3186(>)ER
187410.y0436(>)ER
187410.y1671PF00665 PF02796(plastid)
187410.y2343PF00665 PF02796(plastid)
187410.y1454(+)(PF03797)ER
187410.y3798PF00665 PF02796(plastid)
187410.y2578PF00665 PF02796(plastid)
187410.y2485+(mitochondrial); plastid
187410.y2152(>)(mitochondrial)
187410.y2390(PF00577)ER
187410.y2022PF00665 PF02796(plastid)
187410.y3573(PF03797)ER
187410.y0352+ER
187410.y3614PF00665 PF02796(plastid)
187410.y1940(>)ER
187410.y1942PF00665 PF02796(plastid)
187410.y3149PF00665 PF02796(plastid)
187410.y1122PF00665 PF02796(plastid)
187410.y2143PF00665 PF02796(plastid)
187410.y2389(PF00345)ER
187410.y1541(PF00345)ER
187410.y3818PF00665 PF02796(plastid)
187410.y4065(PF13518)ER
187410.y4062(PF00577)ER
187410.y1858(PF00577)ER
187410.y1600(<)ER
187410.y1134(PF03797)ER
187410.y1425(<)ER
187410.y1550PF00665 PF02796(plastid)
187410.y0610+(mitochondrial); (plastid)
187410.Y1055PF00665 PF02796(plastid)
187410.y2834(<)ER; (ER)
187410.y1884(>)ER
187410.y1977+ER
187410.y0284PF00665 PF02796(plastid)
187410.y0753PF00665 PF02796(plastid)
187410.y0597(PF03272)mitochondrial
187410.y2269(>)mitochondrial
187410.y2267(PF13332)(ER)
187410.y3959+(mitochondrial); plastid
187410.y3480(PF00577)(ER)
187410.y0562(PF00577)ER
187410.y0293+(mitochondrial)
187410.y3213PF00665 PF02796(plastid)
187410.y0961+mitochondrial
187410.Y1098(PF00345)ER
187410.Y1099(PF00577)ER
187410.Y1093PF00665 PF02796(plastid)
187410.y1217PF00665 PF02796(plastid)
187410.y0350(PF00577)mitochondrial
187410.y0351(PF00345)(ER)
187410.y0356(>)(mitochondrial); (plastid)
187410.y3455+mitochondrial; plastid
187410.y3732PF00665 PF02796(plastid)
187410.y0643PF00665 PF02796(plastid)
187410.y4107(PF13518)(ER); plastid
187410.y0139(>)ER
187410.y2867+ER; (ER)
187410.y3844+(>)
187410.y4031PF00665 PF02796(plastid)
187410.y0348(PF00345)mitochondrial; (mitochondrial)
187410.y3445+mitochondrial; (mitochondrial)
187410.y3440(PF13518)mitochondrial
187410.y2880(PF00577)ER
187410.y2883(>)ER
187410.y1834(PF03797)ER
187410.y0653(>)ER
187410.y0655+mitochondrial; (mitochondrial)
187410.y1346(PF03797)ER
187410.y1345(PF03797)ER
187410.y1348(PF08964)ER
187410.y0906PF00665 PF02796(plastid)
187410.y0330(+)+(mitochondrial)
187410.y3479(PF00345)ER
187410.y2895(<)mitochondrial
187410.y0937PF00665 PF02796(plastid)
187410.y2226PF00665 PF02796(plastid)
187410.y3867(>)ER
187410.y2793PF00665 PF02796(plastid)
187410.y3462(PF09811)mitochondrial
187410.y2411PF00665 PF02796(plastid)
187410.y0475PF00665 PF02796(plastid)
187410.y3090PF00665 PF02796(plastid)
187410.y3410(+)mitochondrial
187410.y0306(PF13518)(mitochondrial)
187410.y2682(+)(mitochondrial)
187410.y0694(+)(mitochondrial)
187410.y1314(+)mitochondrial
187410.y2692+(plastid)
187410.y2098++
187410.y2350(+)(mitochondrial)
187410.y3355(PF03400)(mitochondrial)
187410.y0198+(plastid)
187410.y3291+(PF13924)
187410.y0987+(plastid)
187410.y2010(+)(mitochondrial)
187410.y0538++
187410.y1044(>)(ER)
187410.y0224(+)mitochondrial
187410.y0228(+)ER
187410.y1146+(plastid)
187410.y2397+(ER)
187410.y0886(+)ER
187410.y3429(PF03797)(mitochondrial)
187410.y0701(<)ER; not used
187410.y2968(+)ER
187410.y4064+
187410.y3772+(plastid)
187410.y1602+(plastid)
187410.Y1069+(<)
187410.y1412(PF07720)(mitochondrial)
187410.y1397+(<)
187410.y0110PF00665(ER)
187410.y0112(+)mitochondrial
187410.y0567+(PF03797)
187410.y3801(>)(plastid)
187410.y2293++
187410.y3104(+)mitochondrial
187410.y2180(+)ER
187410.y2858+plastid
187410.y2982+(plastid)
187410.y3452+(plastid)
187410.y3453++
187410.y3139(+)(mitochondrial); mitochondrial
187410.y0394(+)mitochondrial; (mitochondrial)
187410.y2465+plastid
187410.y1370(+)(mitochondrial)
187410.y3591+(PF03797)
187410.y3845(+)(PF03797)(mitochondrial)
187410.y1690+(mitochondrial)
187410.y1525+(plastid)
187410.y0240(<)(ER)
187410.y0242+(plastid)
187410.y1601+(mitochondrial)
187410.y0678(+)(ER)
187410.y3257(+)mitochondrial; (mitochondrial)
187410.y2237+(ER)
187410.y3895PF00665
187410.y3896(PF13518)
187410.y3892+
187410.y0316+
187410.y0314+
187410.y1347(+)(plastid)
187410.y1697(PF13332)
187410.y1804+
187410.y1803(+)(mitochondrial)
187410.y2426(>)
187410.y2424(PF00872)
187410.y2425(PF00872)
187410.y0687(<)
187410.y0681+
187410.y3799PF01695
187410.y1334(+)(>)
187410.y3248+not used
187410.y3552(<)not used
187410.y3084+
187410.y2207(>)
187410.y2205+
187410.y3334+
187410.y3339(+)(mitochondrial)
187410.y2743PF01695
187410.y0869+
187410.y1445+not used
187410.y0047+
187410.y0042PF01695
187410.y3400+
187410.y3409+not used
187410.y3408PF01695
187410.y3657+
187410.y1871(PF00577)
187410.y2436PF00665
187410.y0693PF00665
187410.y0457PF01695
187410.y1907(+)(mitochondrial); not used
187410.y1658+
187410.y2327+
187410.y2323(PF00872)
187410.y1019+
187410.y2218+
187410.y2210(PF00872)
187410.y1492+
187410.y1235+
187410.y1477+
187410.y2106+
187410.y2924(+)(ER)
187410.y3439PF00665
187410.y3505+not used
187410.y0518+
187410.y1644+
187410.y0734(+)(plastid)
187410.y0731+not used
187410.y1006PF01695
187410.y1268+
187410.y0994(>)
187410.y2175+
187410.y3428(PF03797)
187410.y2914(+)(mitochondrial)
187410.y0214+
187410.y0505PF01695
187410.y0501(<)
187410.y1853PF01695
187410.y3740+
187410.y0843(PF13518)
187410.y1670PF01695
187410.y2342PF01695
187410.y2580(PF00872)
187410.y0725+
187410.y1075+
187410.y3368+
187410.y3369+
187410.y3169(+)plastid
187410.y1295(>)
187410.Y1094PF01695
187410.y0183(PF03538)
187410.y0185(+)(PF12255)
187410.Y1015+
187410.y2909+
187410.y2903+
187410.y0011+
187410.y3613+not used
187410.y1843+
187410.y3126+
187410.y3193(+)ER; not used
187410.y0402(+)(PF03272)
187410.y2892+
187410.y2371+
187410.y3285+
187410.y2577PF01695
187410.y3379+not used
187410.y2481+
187410.y2151(PF00872)
187410.y2398+
187410.y1594+
187410.Y1007+
187410.y2029+
187410.y2021PF01695
187410.y2069+
187410.y2913+
187410.y0157+
187410.y0410+
187410.y0412(<)
187410.y0239+
187410.y3579(PF13332)
187410.y3578(+)(PF13332)not used
187410.y3616(<)
187410.y3615PF01695
187410.y0037+
187410.y0036+
187410.y3764+
187410.y1941PF01695
187410.y1947+
187410.y2561+
187410.y0707+
187410.y1059+
187410.y3387(PF13518)
187410.y3388PF00665
187410.y1616(PF00872)
187410.y1121PF01695
187410.y2144PF01695
187410.y2383(+)(plastid)
187410.y0897+
187410.y0891+
187410.y1542(PF00872)
187410.y2038(PF00872)
187410.y2967+
187410.y0149+
187410.y3819PF01695
187410.y3544+not used
187410.y4066PF00665
187410.y4060(PF00345)
187410.y4061(PF00577)
187410.y0553+
187410.y2706+
187410.y2708(PF13924)
187410.y3698+
187410.y2634+
187410.y1950(+)(>)
187410.y1738+
187410.y3397+
187410.y3146+
187410.y3399+
187410.y3155+
187410.y3150PF01695
187410.y0958(+)(ER)
187410.y1132(PF00872)
187410.y1559(+)(plastid)
187410.y1558(<)
187410.y1551PF01695
187410.Y1062(PF00872)
187410.y3974+
187410.y2953+
187410.y2951+
187410.y2513+
187410.y4077+
187410.y3023+
187410.y2739+
187410.y2734+
187410.y0546+
187410.y0304+
187410.y3225+
187410.y3709+
187410.y2606(PF00872)
187410.y2605+
187410.Y1025.S(+)(mitochondrial)
187410.y2546+
187410.y2540+
187410.y3016+
187410.y1145+
187410.Y1054PF01695
187410.Y1058+
187410.y2054+
187410.y3292+
187410.y3943+not used
187410.y3946+
187410.y3499+
187410.y2942(>)
187410.y0167+
187410.y2836(PF03059)
187410.y0576+
187410.y1889(PF00872)
187410.y0379+
187410.y3719+not used
187410.y3715(>)
187410.y2612+
187410.y1971+
187410.y0282(+)(PF13518)
187410.y0283PF00665
187410.y0285PF01695
187410.y2531+
187410.y0752PF01695
187410.y0595(PF03400)
187410.y0590+
187410.y3131(+)(mitochondrial)
187410.y1157+
187410.y1390(>)
187410.y1392+
187410.y2191+
187410.y1716(PF08950)
187410.y1711+
187410.y2961(+)+
187410.y1082+
187410.y0111PF01695
187410.y1459(+)(mitochondrial)
187410.y0021(PF13332)
187410.y0563(+)(PF00345)
187410.y3728+
187410.y2660(<)
187410.y0291+
187410.y3032+
187410.y3802(>)
187410.y3451+
187410.y2299(+)PF00665
187410.y2456(<)
187410.y3817(PF00872)
187410.y0633+
187410.y1169(<)not used
187410.y1361+
187410.y2184(PF00872)
187410.y2186+
187410.y3212PF01695
187410.y3210(PF03797)
187410.y1509+not used
187410.y2078+
187410.y0966(>)
187410.y1216PF01695
187410.y1883(+)(plastid)
187410.y2853+
187410.y3588+
187410.y0353(PF00872)
187410.y3733PF01695
187410.y2675(PF00872)
187410.y2258+
187410.y1400+
187410.y2467(+)+
187410.y0642PF01695
187410.y1371(PF00872)
187410.y2672(>)
187410.y1379+
187410.y0824+
187410.y1519+
187410.Y1086(<)
187410.y1194+
187410.y1715+
187410.y0135+
187410.y4108PF00665
187410.y3595(>)
187410.y4030PF01695
187410.y0349+
187410.y3446+
187410.y3441+
187410.y2881(PF00345)
187410.y1084+
187410.y2507(+)(plastid)
187410.y2705+
187410.y1839+
187410.y1832+
187410.y2478+
187410.y2475+
187410.y2553+
187410.y1743(PF00872)
187410.y1748(PF00872)
187410.y3460+
187410.y0905PF01695
187410.y3906(+)(plastid)
187410.y3905+
187410.y0792+
187410.y4136(<)
187410.y2874+
187410.y2878+
187410.y3874(+)(mitochondrial); not used
187410.y0014+not used
187410.y0016+
187410.y0338+
187410.y0334(+)(mitochondrial)
187410.y1350+
187410.y1689+
187410.y2313+
187410.y2318(>)
187410.y3262(+)plastid
187410.y0797+
187410.y1532(+)(PF11397)
187410.y1535+
187410.y0117(+)(ER)
187410.y0936PF01695
187410.y2225PF01695
187410.y2777(+)+
187410.y2108+
187410.y1220+
187410.y4122(>)
187410.y2501+
187410.y2500+not used
187410.y2508+
187410.y4011+not used
187410.y0925+
187410.y2794PF01695
187410.y0326+
187410.y0491+
187410.y0495+
187410.y0258+not used
187410.y0789+
187410.y2410PF01695
187410.y3781(+)(plastid)
187410.y0476PF01695
187410.y0471+
187410.y1320PF01695
187410.y1590+
187410.y3091PF01695
187410.y3288+
187410.y1781(PF00872)
187410.y2232+
187410.y3327+
187410.y2123+
187410.y0319(+)
187410.y0262(+)
187410.y0261(+)
187410.y3525(+)
187410.y3064(+)
187410.y3067(+)
187410.y3066(+)
187410.y1805(+)
187410.y2420(+)not used
187410.y3794(+)
187410.y0447(+)
187410.y3249(+)
187410.y1026(+)
187410.y1244(+)
187410.y4141(+)
187410.y2937(+)
187410.y2938(+)
187410.y3403(+)
187410.y0272(+)
187410.y1622(+)
187410.y3537(+)
187410.y3533(+)
187410.y2396(+)
187410.y0743(+)
187410.y3551(+)
187410.y2434(+)not used
187410.y1901(+)
187410.y0023(+)
187410.y1011(+)not used
187410.y3109(+)
187410.y3436(+)
187410.y2694(+)
187410.y2690(+)
187410.y0200(+)not used
187410.y3508(+)
187410.y0517(+)
187410.y1863(+)
187410.y3144(+)
187410.y2597(+)not used
187410.y2594(+)not used
187410.y1009(+)
187410.y0992(+)
187410.y0997(+)
187410.y1460(+)
187410.y0190(+)
187410.y0191+
187410.y1762(+)
187410.y1765(+)
187410.y3427(+)
187410.y2188(+)
187410.y1469(+)
187410.y2349(+)
187410.y2585(+)
187410.y3925(+)
187410.y0985(+)
187410.y1584(+)
187410.y0187(+)
187410.y0229(+)
187410.y3567(+)
187410.y3568(+)
187410.y1847(+)
187410.y1632(+)
187410.y1930(+)
187410.y1932(+)
187410.y2372(+)
187410.y2572(+)not used
187410.y3372(+)not used
187410.y2480(+)
187410.y1661(+)
187410.y1284(+)
187410.y1289(+)
187410.y2975(+)
187410.y2976(+)
187410.y3853(+)
187410.y3577(+)
187410.y3574(+)not used
187410.y0520(+)
187410.y2715(+)
187410.y2621(+)
187410.y1352(+)
187410.y3381(+)
187410.y3383(+)
187410.y1610(+)
187410.y0896(+)
187410.y1546(+)
187410.y2984(+)
187410.y3458(+)
187410.Y1102(+)
187410.y2962(+)not used
187410.y1053(+)
187410.y3607(+)
187410.y0391(+)
187410.y3306(+)
187410.y2637(+)
187410.y2941(+)
187410.y0426(+)
187410.y1992(+)
187410.y0953(+)
187410.y1136(+)
187410.y4091(+)
187410.y4096(+)
187410.y1125(+)
187410.y3979(+)
187410.y0176(+)
187410.y3807(+)
187410.y4079(+)
187410.y1896(+)
187410.y3828(+)
187410.y2542(+)
187410.y1707(+)not used
187410.y1708(+)not used
187410.y0268(+)
187410.y1634(+)
187410.y3234(+)
187410.y3231(+)
187410.y1563(+)
187410.Y1051(+)
187410.y1097(+)
187410.y3940(+)
187410.y0160(+)
187410.y3839(+)
187410.y1078(+)
187410.y1130(+)
187410.y0574(+)
187410.y1073(+)not used
187410.y2862(+)
187410.y3004(+)
187410.y0754(+)
187410.y0755(+)
187410.y0624(+)
187410.y0625(+)
187410.y2757(+)
187410.y1875(+)
187410.y4057(+)
187410.y0024(+)
187410.y2498(+)
187410.y2999(+)
187410.y0363(+)
187410.y3726(+)
187410.y0547(+)
187410.y3729(+)
187410.y0299(+)
187410.y3033(+)
187410.y2819(+)
187410.y0639(+)
187410.y2182(+)
187410.y1900(+)
187410.y1502(+)
187410.y1653(+)
187410.y0960(+)
187410.y3928(+)
187410.Y1090(+)
187410.Y1097(+)
187410.y3926(+)
187410.y1218(+)
187410.y1188(+)
187410.y3851(+)
187410.y4021(+)
187410.y4028(+)
187410.y2622(+)
187410.y3738(+)
187410.y1996(+)
187410.y3027(+)
187410.y3021(+)
187410.y0559(+)
187410.y1173(+)
187410.y0826(+)
187410.y0821(+)
187410.y0918(+)
187410.Y1083(+)
187410.y3583(+)
187410.y3590(+)
187410.y3592(+)
187410.y3175(+)
187410.y4038(+)
187410.y3442(+)
187410.y2887(+)
187410.y1087(+)
187410.y2509(+)
187410.y0651(+)
187410.y1699(+)not used
187410.y3903+
187410.y4137(+)
187410.y2877(+)
187410.y2876(+)
187410.y1990(+)
187410.y1037(+)
187410.y0487(+)
187410.y2898(+)
187410.y3041(+)
187410.y2761(+)
187410.y0535(+)
187410.y0602(+)
187410.y0462(+)
187410.y1623(+)
187410.y1684(+)
187410.y2316(+)
187410.y2310(+)
187410.y1536(+)
187410.y2130(+)
187410.y4127(+)
187410.y0799(+)
187410.y3866(+)
187410.y4015(+)
187410.y0928(+)
187410.y3751(+)
187410.y3463(+)
187410.y3438(+)
187410.y0490(+)
187410.y4120(+)
187410.y3430(+)
187410.y0786(+)
187410.y1817(+)
187410.y3096(+)
187410.y2476(+)
187410.y2235(+)
187410.y3324(+)
187410.y3325(+)
187410.y2127(+)
187410.y0922(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.5 (15/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 3.25 (26/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================