Effective results for Staphylococcus epidermidis RP62A (eggnog40)

Summary

Number of putative secreted proteins: 43
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 43 proteins (12 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
176279.SERP0761				PF05257	ER
176279.SERP1370				(PF03596)	(ER)
176279.SERP1811				(PF00344)	(mitochondrial)
176279.SERP2263				PF05257	ER
176279.SERP0422				PF05257	ER; (ER)
176279.SERP2120				PF05257	ER
176279.SERP1884				PF05257	ER
176279.SERP2221				(PF03596)	ER; (ER)
176279.SERP1964				(PF11070)	ER
176279.SERP1955				(PF06039)	(ER)
176279.SERP2280				(PF00344)	mitochondrial
176279.SERP0318				PF05257	(mitochondrial)
176279.SERP2136				PF05257	(ER)
176279.SERP1880				PF05257	(ER)
176279.SERP0380				(PF02371)
176279.SERP0544				(PF02371)
176279.SERP2412				(PF06039)
176279.SERP0991				(PF02371)
176279.SERP1730				(PF02371)
176279.SERP1737				(PF03630)
176279.SERP2168				(PF06039)
176279.SERP1220				(PF00398)
176279.SERP1221				(PF13427)
176279.SERP0260				(PF02371)
176279.SERP1911				(PF02371)
176279.SERP0404				(PF05495)
176279.SERP2509				(PF13427)
176279.SERP2312				(PF06039)
176279.SERP2013				PF08771
176279.SERP1650				PF05257
176279.SERP0131				(PF00398)
176279.SERP2510				(PF00398)
176279.SERP2477				(PF08357)
176279.SERP0697				(PF02371)
176279.SERP0577				(PF02371)
176279.SERP1348				(PF02371)
176279.SERP1343				(PF00398)
176279.SERP1344				(PF13427)
176279.SERP0100				PF05257
176279.SERP1509				PF04275
176279.SERP0565				(PF02371)
176279.SERP0558				(PF02371)
176279.SERP0160				(PF02371)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================