Effective results for Dechloromonas aromatica RCB (eggnog40)

Summary

Number of putative secreted proteins: 56
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 56 proteins (0 high, 56 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
159087.Daro_1831(PF13386)ER
159087.Daro_2578(PF09459)ER
159087.Daro_3570(PF13606)ER
159087.Daro_1186(PF05023)ER
159087.Daro_1504(PF00139)ER
159087.Daro_0059(PF12974)ER
159087.Daro_1502(PF04862)ER
159087.Daro_1862(PF12974)ER
159087.Daro_0865(PF01118)(ER)
159087.Daro_3323(PF02239)ER
159087.Daro_3260(PF02239)ER
159087.Daro_3685(PF12974)ER
159087.Daro_0241(PF12974)ER
159087.Daro_2490(PF12974)ER
159087.Daro_3270(PF02239)ER
159087.Daro_3273(PF09459)ER
159087.Daro_3274(PF02239)ER
159087.Daro_4085(PF12974)ER; (ER)
159087.Daro_3714(PF12974)ER
159087.Daro_3099(PF12974)ER
159087.Daro_2602(PF12974)(mitochondrial)
159087.Daro_3950(PF01814)mitochondrial; (mitochondrial)
159087.Daro_2956(PF13386)ER
159087.Daro_1826(PF12974)mitochondrial
159087.Daro_1049(PF13386)ER
159087.Daro_3807(PF01118)(mitochondrial)
159087.Daro_3954(PF01814)(ER)
159087.Daro_1617(PF01814)
159087.Daro_3376(PF11969)
159087.Daro_2767(PF01814)
159087.Daro_2762(PF01814)
159087.Daro_2507(PF04383)
159087.Daro_1670(PF01814)
159087.Daro_0906(PF01118)
159087.Daro_2683(PF01814)
159087.Daro_1863(PF01118)
159087.Daro_0910(PF01814)
159087.Daro_3783(PF01118)
159087.Daro_1423(PF13606)
159087.Daro_0795(PF04383)
159087.Daro_1333(PF01814)
159087.Daro_1660(PF01814)
159087.Daro_3696(PF01814)
159087.Daro_2268(PF01814)
159087.Daro_1355(PF01118)
159087.Daro_0364(PF01814)
159087.Daro_0996(PF01814)
159087.Daro_1373(PF14022)
159087.Daro_1371(PF14022)
159087.Daro_3239(PF01118)
159087.Daro_0968(PF00025)
159087.Daro_0965(PF01814)
159087.Daro_3414(PF07701)
159087.Daro_0398(PF00614)
159087.Daro_0392(PF00614)
159087.Daro_0396(PF00614)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 2.5 (20/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================