Effective results for Flavobacteria bacterium BBFL7 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 29 proteins (6 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
156586.BBFL7_01171(PF04784)ER
156586.BBFL7_00988(PF15902)ER
156586.BBFL7_01161(PF04784)ER
156586.BBFL7_01614(PF15902)mitochondrial
156586.BBFL7_02050(PF16313)mitochondrial
156586.BBFL7_00190(PF14240)ER
156586.BBFL7_01110(PF16561)ER
156586.BBFL7_02134(PF15902)ER
156586.BBFL7_01879(PF16561)ER
156586.BBFL7_02094(PF16313)ER
156586.BBFL7_00641PF00629ER
156586.BBFL7_00640PF00629ER
156586.BBFL7_01502PF00629ER
156586.BBFL7_01089(PF16313)ER
156586.BBFL7_00639PF00629ER
156586.BBFL7_00706(PF04784)ER
156586.BBFL7_02364(PF14240)ER
156586.BBFL7_00151PF02014ER
156586.BBFL7_01570(PF03321)(mitochondrial)
156586.BBFL7_00818(PF09112) (PF09113)
156586.BBFL7_01370(PF03321)(ER)
156586.BBFL7_01865(PF09537)
156586.BBFL7_01275(PF12899)
156586.BBFL7_02468(PF03321)
156586.BBFL7_01070(PF09537)
156586.BBFL7_00862(PF09537)
156586.BBFL7_00462(PF10504)
156586.BBFL7_00141PF13691
156586.BBFL7_02378(PF03016)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================