Effective results for Azospirillum sp. B510 (eggnog40)

Summary

Number of putative secreted proteins: 39
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 39 proteins (1 high, 38 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
137722.AZL_004700				(PF13384)	(mitochondrial)
137722.AZL_011680				(PF13384)	(mitochondrial)
137722.AZL_028100				(PF01609)	(mitochondrial)
137722.AZL_027890				(PF13384)	(mitochondrial)
137722.AZL_011470				(PF01609)	(mitochondrial)
137722.AZL_014280				(PF01609)	(mitochondrial)
137722.AZL_010280				(PF01609)	(mitochondrial)
137722.AZL_011010				(PF07678)	ER
137722.AZL_023530				(PF01609)	(mitochondrial)
137722.AZL_001220				(PF13384)	(mitochondrial)
137722.AZL_025240				(PF13384)	(mitochondrial)
137722.AZL_027490				(PF13384)	(mitochondrial)
137722.AZL_000550				(PF13384)	(mitochondrial)
137722.AZL_009380				(PF13518)	mitochondrial; (mitochondrial)
137722.AZL_019060				(PF01609)	(mitochondrial)
137722.AZL_027630				(PF13518)	(plastid)
137722.AZL_026980				(PF13518)	(plastid)
137722.AZL_018980				(PF13518)	(plastid)
137722.AZL_007120				PF13733
137722.AZL_017210				(PF01609)
137722.AZL_008820				(PF01609)
137722.AZL_014180				(PF01609)
137722.AZL_011480				(PF01609)
137722.AZL_026960				(PF01609)
137722.AZL_013730				(PF01609)
137722.AZL_011070				(PF12513)
137722.AZL_026560				(PF01609)
137722.AZL_025270				(PF13518)
137722.AZL_018900				(PF01609)
137722.AZL_027750				(PF01609)
137722.AZL_007790				(PF01609)
137722.AZL_023950				(PF01609)
137722.AZL_023550				(PF01609)
137722.AZL_022140				(PF01609)
137722.AZL_027860				(PF13518)
137722.AZL_019040				(PF01609)
137722.AZL_027290				(PF01609)
137722.AZL_004020				(PF09731)
137722.AZL_021260				(PF01609)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================