Effective results for Streptococcus macedonicus ACA-DC 198 (eggnog40)

Summary

Number of putative secreted proteins: 143
- Predicted by T4SEpre: 107
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 58 proteins (30 high, 28 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1116231.SMA_0280+ER
1116231.SMA_1823(PF13276)(mitochondrial); (plastid)
1116231.SMA_0279+ER
1116231.SMA_1528+ER
1116231.SMA_0015+ER
1116231.SMA_0461+mitochondrial
1116231.SMA_1287+(mitochondrial); ER
1116231.SMA_1503+ER
1116231.SMA_0022(PF05257)ER
1116231.SMA_1745+ER
1116231.SMA_0907PF01610(mitochondrial)
1116231.SMA_1956+(mitochondrial)
1116231.SMA_1300(PF05257)ER
1116231.SMA_2084+ER
1116231.SMA_1403+ER
1116231.SMA_2009+ER
1116231.SMA_1465(PF03714)mitochondrial
1116231.SMA_1691+ER
1116231.SMA_1479+ER
1116231.SMA_1330+ER
1116231.SMA_0501+(mitochondrial)
1116231.SMA_1819+(mitochondrial)
1116231.SMA_1500+(ER)
1116231.SMA_2069(PF05495)(plastid)
1116231.SMA_0809+(ER)
1116231.SMA_1975(PF13276)(plastid)
1116231.SMA_0583+(mitochondrial)
1116231.SMA_1766+(plastid)
1116231.SMA_1146+(ER)
1116231.SMA_1913(PF13276)(plastid)
1116231.SMA_1260+(ER)
1116231.SMA_0676(PF13276)(mitochondrial)
1116231.SMA_0075+
1116231.SMA_0078PF01610not used
1116231.SMA_0079PF01610
1116231.SMA_1254+not used
1116231.SMA_0443+
1116231.SMA_0289+
1116231.SMA_1535+
1116231.SMA_0069+
1116231.SMA_0475+
1116231.SMA_0724+
1116231.SMA_0874PF01610not used
1116231.SMA_0872PF01610not used
1116231.SMA_0873PF01610
1116231.SMA_0366+
1116231.SMA_0018PF01610
1116231.SMA_0017PF01610not used
1116231.SMA_1739+
1116231.SMA_1733PF01610
1116231.SMA_1603+
1116231.SMA_1601PF01610
1116231.SMA_1514+
1116231.SMA_0549(PF02065)
1116231.SMA_0136PF01610
1116231.SMA_0138+
1116231.SMA_1351(PF13276)
1116231.SMA_0255+
1116231.SMA_1723(PF13936)
1116231.SMA_1507+
1116231.SMA_0518(PF13936)
1116231.SMA_0923(PF13936)
1116231.SMA_0818+
1116231.SMA_0756+
1116231.SMA_1578PF01610
1116231.SMA_0115+
1116231.SMA_1372+
1116231.SMA_0560+
1116231.SMA_0562+
1116231.SMA_2180+
1116231.SMA_0908PF01610
1116231.SMA_1563+not used
1116231.SMA_1989PF01610not used
1116231.SMA_1364(PF13276)
1116231.SMA_1367(PF13936)
1116231.SMA_1366+
1116231.SMA_0681(PF13936)
1116231.SMA_1419(PF05257)
1116231.SMA_1796PF01610
1116231.SMA_0916PF01610
1116231.SMA_0216(PF02065)
1116231.SMA_2092+
1116231.SMA_1096PF01610
1116231.SMA_0548+
1116231.SMA_1784PF01610
1116231.SMA_1544+
1116231.SMA_1547+
1116231.SMA_2140+
1116231.SMA_0373+
1116231.SMA_1234+
1116231.SMA_0551(PF02065)
1116231.SMA_0550(PF02065)
1116231.SMA_0555+
1116231.SMA_1936PF01610not used
1116231.SMA_1845PF01610
1116231.SMA_1208+
1116231.SMA_0410+
1116231.SMA_0523+
1116231.SMA_2015(PF05257)
1116231.SMA_0634+
1116231.SMA_0720PF01610
1116231.SMA_0638+
1116231.SMA_1459PF01610
1116231.SMA_1456+
1116231.SMA_1453(PF13276)
1116231.SMA_1326(PF13276)
1116231.SMA_1859PF01610
1116231.SMA_0689PF01610not used
1116231.SMA_0313+
1116231.SMA_1046+
1116231.SMA_2004+
1116231.SMA_2000+
1116231.SMA_2170+
1116231.SMA_1464(PF03714)
1116231.SMA_0954PF01610
1116231.SMA_0082(PF13936)
1116231.SMA_1919+
1116231.SMA_1862+
1116231.SMA_0321+
1116231.SMA_1121(PF13276)
1116231.SMA_0433PF01610
1116231.SMA_2106+
1116231.SMA_1673+
1116231.SMA_0982PF01610
1116231.SMA_0188(PF02065)not used
1116231.SMA_1901+
1116231.SMA_1903+
1116231.SMA_0051+
1116231.SMA_0333+
1116231.SMA_1275+
1116231.SMA_1068PF01610
1116231.SMA_2117+
1116231.SMA_0994+
1116231.SMA_0996+
1116231.SMA_1801+
1116231.SMA_0297+
1116231.SMA_0294PF01610
1116231.SMA_0299+
1116231.SMA_1079+
1116231.SMA_2123+
1116231.SMA_2120+
1116231.SMA_0706(PF13276)
1116231.SMA_0855PF02916

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================