Effective results for Flavobacterium columnare ATCC 49512 (eggnog40)

Summary

Number of putative secreted proteins: 57
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 57 proteins (8 high, 49 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1041826.FCOL_07985(PF00431)ER
1041826.FCOL_03605PF05572(ER)
1041826.FCOL_06695PF05572ER
1041826.FCOL_00535(PF13431)ER
1041826.FCOL_00950(PF03162)ER
1041826.FCOL_11270(PF00161)ER
1041826.FCOL_08260(PF02884)ER
1041826.FCOL_09485(PF13431)ER; (ER)
1041826.FCOL_03555(PF12256)ER
1041826.FCOL_11280PF05572ER
1041826.FCOL_07755PF05572ER
1041826.FCOL_12715PF05572ER
1041826.FCOL_05500(PF02884)ER
1041826.FCOL_10745PF05572ER
1041826.FCOL_06375(PF01609)(mitochondrial)
1041826.FCOL_00435(PF13906)(mitochondrial)
1041826.FCOL_06600PF05572ER
1041826.FCOL_10920(PF12256)ER
1041826.FCOL_10090PF05572ER
1041826.FCOL_05970(PF01609)(mitochondrial)
1041826.FCOL_10225(PF02128)ER
1041826.FCOL_02230(PF01902)(mitochondrial)
1041826.FCOL_05565(PF01610)
1041826.FCOL_11425(PF01610)
1041826.FCOL_09850(PF16804)
1041826.FCOL_05660(PF01609)
1041826.FCOL_04685(PF04493)
1041826.FCOL_04680(PF04493)
1041826.FCOL_05230(PF01609)
1041826.FCOL_05065(PF01902)
1041826.FCOL_10805(PF01609)
1041826.FCOL_02955(PF01609)
1041826.FCOL_08035(PF01610)
1041826.FCOL_08030(PF01610)
1041826.FCOL_03435(PF02128)
1041826.FCOL_08205(PF05686)
1041826.FCOL_06355(PF01609)
1041826.FCOL_07935(PF01610)
1041826.FCOL_00740(PF07766)
1041826.FCOL_08300(PF01610)
1041826.FCOL_09780(PF09994)
1041826.FCOL_00005(PF01609)
1041826.FCOL_07905(PF09994)
1041826.FCOL_08555(PF01609)
1041826.FCOL_09190(PF01609)
1041826.FCOL_03675(PF01609)
1041826.FCOL_08375(PF07701)
1041826.FCOL_12825(PF09994)
1041826.FCOL_12485(PF01609)
1041826.FCOL_04955(PF01609)
1041826.FCOL_08340(PF01609)
1041826.FCOL_12945(PF15891)
1041826.FCOL_04410(PF01610)
1041826.FCOL_04415(PF01610)
1041826.FCOL_05940(PF01609)
1041826.FCOL_11400(PF01609)
1041826.FCOL_11950(PF01609)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================