Effective results for Haemophilus pittmaniae HK 85 (eggnog40)

Summary

Number of putative secreted proteins: 66
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 66 proteins (11 high, 55 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1035188.HMPREF9952_0045(PF00939)ER; (ER)
1035188.HMPREF9952_2402(PF16327)ER
1035188.HMPREF9952_0586(PF03222)(ER)
1035188.HMPREF9952_1185(PF00939)ER
1035188.HMPREF9952_1184(PF00939)ER
1035188.HMPREF9952_2225PF00687(mitochondrial)
1035188.HMPREF9952_1144(PF08496)ER
1035188.HMPREF9952_1150PF02987ER
1035188.HMPREF9952_1834PF13332(mitochondrial); (ER)
1035188.HMPREF9952_0013(PF03767)ER
1035188.HMPREF9952_2326(PF03222)ER
1035188.HMPREF9952_2327(PF03222)ER
1035188.HMPREF9952_0990(PF02033)(mitochondrial)
1035188.HMPREF9952_2266(PF06472)ER
1035188.HMPREF9952_2242(PF03222)ER; (ER)
1035188.HMPREF9952_0397(PF16327)ER
1035188.HMPREF9952_0396(PF16327)ER
1035188.HMPREF9952_0891(PF06472)ER
1035188.HMPREF9952_1932(PF00344)ER
1035188.HMPREF9952_2387(PF00939)ER
1035188.HMPREF9952_0603(PF00573)(mitochondrial)
1035188.HMPREF9952_0021(PF03222)(ER)
1035188.HMPREF9952_1368PF13332(plastid)
1035188.HMPREF9952_0207PF03414 (PF05704)
1035188.HMPREF9952_0046(PF00939)
1035188.HMPREF9952_0450(PF10571)
1035188.HMPREF9952_0740(PF12949)
1035188.HMPREF9952_0930(PF02446)
1035188.HMPREF9952_2224PF00687
1035188.HMPREF9952_1201(PF09330)not used
1035188.HMPREF9952_1202(PF09330)
1035188.HMPREF9952_1533(PF10063)
1035188.HMPREF9952_0179(PF06472)
1035188.HMPREF9952_1943(PF03767)
1035188.HMPREF9952_0018(PF00318)
1035188.HMPREF9952_0019(PF00318)not used
1035188.HMPREF9952_0014(PF03767)
1035188.HMPREF9952_1493(PF02547)
1035188.HMPREF9952_1495(PF02547)
1035188.HMPREF9952_1494(PF02547)
1035188.HMPREF9952_2218(PF04127)
1035188.HMPREF9952_2219(PF04127)
1035188.HMPREF9952_0987(PF11987)
1035188.HMPREF9952_0988(PF11987)
1035188.HMPREF9952_0989(PF02033)not used
1035188.HMPREF9952_1366PF13332
1035188.HMPREF9952_1369PF13332
1035188.HMPREF9952_2470(PF00939)
1035188.HMPREF9952_1378PF13332
1035188.HMPREF9952_1379PF13332
1035188.HMPREF9952_1006(PF01755)
1035188.HMPREF9952_0349(PF01755)
1035188.HMPREF9952_1915(PF04997)
1035188.HMPREF9952_1916(PF04997)
1035188.HMPREF9952_0892(PF06472)
1035188.HMPREF9952_0893(PF06472)
1035188.HMPREF9952_0252(PF13603)
1035188.HMPREF9952_0253(PF13603)
1035188.HMPREF9952_1931(PF00344)
1035188.HMPREF9952_1143(PF08496)
1035188.HMPREF9952_0609PF13332not used
1035188.HMPREF9952_0604(PF00573)
1035188.HMPREF9952_0858(PF01755)
1035188.HMPREF9952_1675(PF02446)
1035188.HMPREF9952_1674(PF02446)
1035188.HMPREF9952_1676(PF02446)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================