Effective results for Flavobacterium branchiophilum FL-15 (eggnog40)

Summary

Number of putative secreted proteins: 48
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 48 proteins (2 high, 46 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1034807.FBFL15_0918(PF02777) (PF00081)ER
1034807.FBFL15_0917(PF02777) (PF00081)ER
1034807.FBFL15_1555(PF02777) (PF00081)ER
1034807.FBFL15_1220(PF13905)ER
1034807.FBFL15_3036(PF13905)ER
1034807.FBFL15_1662(PF08487)ER
1034807.FBFL15_0919PF01375ER
1034807.FBFL15_1642(PF10988)ER
1034807.FBFL15_2444(PF10988)ER
1034807.FBFL15_2058(PF10988)ER
1034807.FBFL15_0002(PF10988)ER
1034807.FBFL15_1377(PF10988)ER
1034807.FBFL15_2978(PF13905)ER
1034807.FBFL15_2177(PF14240)ER
1034807.FBFL15_2171(PF14240)ER
1034807.FBFL15_2288(PF02384)mitochondrial; (mitochondrial)
1034807.FBFL15_0820(PF02384)(ER)
1034807.FBFL15_2972(PF02777) (PF00081)
1034807.FBFL15_0052(PF15610)
1034807.FBFL15_2293(PF05970)
1034807.FBFL15_2309(PF12762)
1034807.FBFL15_1134(PF03235)
1034807.FBFL15_0471(PF02384)
1034807.FBFL15_1598(PF12762)
1034807.FBFL15_1698(PF13905)
1034807.FBFL15_1692(PF07766)
1034807.FBFL15_0247(PF03235)
1034807.FBFL15_2133(PF02384)
1034807.FBFL15_1279(PF10504)
1034807.FBFL15_1098(PF03803)
1034807.FBFL15_1795(PF03235)
1034807.FBFL15_1796(PF03235)
1034807.FBFL15_2506(PF02384)
1034807.FBFL15_1334(PF12762)
1034807.FBFL15_0596PF07492
1034807.FBFL15_2456(PF13906)
1034807.FBFL15_2522(PF03235)
1034807.FBFL15_2520(PF12762)
1034807.FBFL15_1761(PF03235)
1034807.FBFL15_2737(PF03235)
1034807.FBFL15_0013(PF05970)
1034807.FBFL15_1015(PF02384)
1034807.FBFL15_1959(PF02384)
1034807.FBFL15_0024(PF12762)
1034807.FBFL15_2156(PF08487)
1034807.FBFL15_0854(PF02384)
1034807.FBFL15_1800(PF02384)
1034807.FBFL15_2178(PF02384)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================