Effective results for Flavobacterium branchiophilum FL-15 (eggnog40)

Summary

Number of putative secreted proteins: 48
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 48 proteins (2 high, 46 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
1034807.FBFL15_0918				(PF02777) (PF00081)	ER
1034807.FBFL15_0917				(PF02777) (PF00081)	ER
1034807.FBFL15_1555				(PF02777) (PF00081)	ER
1034807.FBFL15_1220				(PF13905)	ER
1034807.FBFL15_3036				(PF13905)	ER
1034807.FBFL15_1662				(PF08487)	ER
1034807.FBFL15_0919				PF01375	ER
1034807.FBFL15_1642				(PF10988)	ER
1034807.FBFL15_2444				(PF10988)	ER
1034807.FBFL15_2058				(PF10988)	ER
1034807.FBFL15_0002				(PF10988)	ER
1034807.FBFL15_1377				(PF10988)	ER
1034807.FBFL15_2978				(PF13905)	ER
1034807.FBFL15_2177				(PF14240)	ER
1034807.FBFL15_2171				(PF14240)	ER
1034807.FBFL15_2288				(PF02384)	mitochondrial; (mitochondrial)
1034807.FBFL15_0820				(PF02384)	(ER)
1034807.FBFL15_2972				(PF02777) (PF00081)
1034807.FBFL15_0052				(PF15610)
1034807.FBFL15_2293				(PF05970)
1034807.FBFL15_2309				(PF12762)
1034807.FBFL15_1134				(PF03235)
1034807.FBFL15_0471				(PF02384)
1034807.FBFL15_1598				(PF12762)
1034807.FBFL15_1698				(PF13905)
1034807.FBFL15_1692				(PF07766)
1034807.FBFL15_0247				(PF03235)
1034807.FBFL15_2133				(PF02384)
1034807.FBFL15_1279				(PF10504)
1034807.FBFL15_1098				(PF03803)
1034807.FBFL15_1795				(PF03235)
1034807.FBFL15_1796				(PF03235)
1034807.FBFL15_2506				(PF02384)
1034807.FBFL15_1334				(PF12762)
1034807.FBFL15_0596				PF07492
1034807.FBFL15_2456				(PF13906)
1034807.FBFL15_2522				(PF03235)
1034807.FBFL15_2520				(PF12762)
1034807.FBFL15_1761				(PF03235)
1034807.FBFL15_2737				(PF03235)
1034807.FBFL15_0013				(PF05970)
1034807.FBFL15_1015				(PF02384)
1034807.FBFL15_1959				(PF02384)
1034807.FBFL15_0024				(PF12762)
1034807.FBFL15_2156				(PF08487)
1034807.FBFL15_0854				(PF02384)
1034807.FBFL15_1800				(PF02384)
1034807.FBFL15_2178				(PF02384)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================