Metamenu

Effective results for Salinisphaera shabanensis E1L3A (eggnog40)

Summary

Number of putative secreted proteins: 77
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 31 eukaryotic-like domains, contained in 77 proteins (1 high, 76 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1033802.SSPSH_14054(PF14539)mitochondrial; (mitochondrial)
1033802.SSPSH_14064(PF13778)ER
1033802.SSPSH_00775(PF02239)ER
1033802.SSPSH_06611(PF06258)(mitochondrial)
1033802.SSPSH_00070(PF09317)ER
1033802.SSPSH_14099(PF06779)ER
1033802.SSPSH_14094(PF06779)ER
1033802.SSPSH_09425(PF09317)ER
1033802.SSPSH_13187(PF13778)ER
1033802.SSPSH_13217(PF06779)ER
1033802.SSPSH_10782(PF02239)ER
1033802.SSPSH_17339(PF15892)mitochondrial
1033802.SSPSH_02658(PF04127)mitochondrial; (mitochondrial)
1033802.SSPSH_00790(PF02239)ER
1033802.SSPSH_10237(PF06241)ER; mitochondrial
1033802.SSPSH_13222(PF06779)ER
1033802.SSPSH_15653(PF15892)mitochondrial
1033802.SSPSH_09465(PF11911)ER
1033802.SSPSH_03987(PF11911)ER
1033802.SSPSH_13157(PF00080)ER
1033802.SSPSH_17289(PF03100)ER
1033802.SSPSH_11292(PF02239)ER
1033802.SSPSH_19329(PF00080)ER
1033802.SSPSH_13177(PF14539)mitochondrial; (mitochondrial)
1033802.SSPSH_04027(PF09317)ER
1033802.SSPSH_19339(PF07250)(ER)
1033802.SSPSH_14034(PF00080)ER
1033802.SSPSH_05457(PF14539)mitochondrial
1033802.SSPSH_02992(PF10504)(mitochondrial)
1033802.SSPSH_13162(PF12872)ER
1033802.SSPSH_05462(PF14539)(ER)
1033802.SSPSH_14039(PF12872)ER
1033802.SSPSH_15603(PF03100)ER; not used
1033802.SSPSH_00965(PF01016)
1033802.SSPSH_14069(PF09996)
1033802.SSPSH_01778(PF04286)
1033802.SSPSH_00970(PF00829)
1033802.SSPSH_01518(PF14437)
1033802.SSPSH_05724(PF14145)
1033802.SSPSH_17219(PF05491)
1033802.SSPSH_07396(PF00887)
1033802.SSPSH_15594(PF03100)not used
1033802.SSPSH_06616(PF06258)
1033802.SSPSH_04047(PF04286)
1033802.SSPSH_05689(PF04248)
1033802.SSPSH_14229(PF03079)
1033802.SSPSH_13192(PF09996)
1033802.SSPSH_15524(PF05491)
1033802.SSPSH_09405(PF04286)
1033802.SSPSH_01473(PF04127)
1033802.SSPSH_09665(PF14145)
1033802.SSPSH_18777(PF00829)
1033802.SSPSH_09700(PF04248)
1033802.SSPSH_10052(PF04248)
1033802.SSPSH_18782(PF01016)
1033802.SSPSH_18787(PF01018)
1033802.SSPSH_03352(PF12872)
1033802.SSPSH_10062(PF04127)
1033802.SSPSH_17465(PF09317)
1033802.SSPSH_17079(PF00101)
1033802.SSPSH_06276PF13405not used
1033802.SSPSH_02203(PF03079)
1033802.SSPSH_14769(PF14437)
1033802.SSPSH_15364(PF00274)
1033802.SSPSH_09440(PF00887)
1033802.SSPSH_00320(PF00274)
1033802.SSPSH_09907(PF01756)
1033802.SSPSH_01628(PF01756)
1033802.SSPSH_10017(PF14437)
1033802.SSPSH_01483(PF04248)
1033802.SSPSH_04812(PF09317)
1033802.SSPSH_18058(PF13429)
1033802.SSPSH_15384(PF00101)
1033802.SSPSH_17059(PF00274)
1033802.SSPSH_04012(PF00887)
1033802.SSPSH_00955(PF01018)
1033802.SSPSH_03682(PF13429)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================