Effective results for Acetonema longum DSM 6540 (eggnog40)

Summary

Number of putative secreted proteins: 168
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 40 eukaryotic-like domains, contained in 168 proteins (32 high, 136 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1009370.ALO_16087(PF01558) (PF01855) (PF10371) PF17147 (PF12838)
1009370.ALO_10714(PF01558) (PF01855) (PF10371) PF17147
1009370.ALO_13424(PF01558) (PF01855) (PF10371) PF17147
1009370.ALO_19132(PF03600)ER
1009370.ALO_18350(PF06725)ER
1009370.ALO_07908(PF02906) (PF12838) (PF02256)
1009370.ALO_13464(PF00163)(mitochondrial)
1009370.ALO_11224(PF03600)mitochondrial
1009370.ALO_11824(PF13246)mitochondrial
1009370.ALO_15022(PF03600)ER
1009370.ALO_03476(PF00163)(mitochondrial)
1009370.ALO_05238(PF13857)ER
1009370.ALO_03249(PF06725)ER
1009370.ALO_16127(PF00939)ER
1009370.ALO_05775(PF03600)ER
1009370.ALO_09399(PF00939)ER
1009370.ALO_12154(PF07670)(ER); ER
1009370.ALO_16672(PF12838)ER
1009370.ALO_03631PF13332(ER)
1009370.ALO_02831(PF03483)(mitochondrial); (plastid)
1009370.ALO_03836(PF03600)ER
1009370.ALO_16057(PF00939)ER
1009370.ALO_13519(PF00939)(ER)
1009370.ALO_12231(PF00939)ER
1009370.ALO_15427(PF03600)ER
1009370.ALO_10329(PF06725)ER
1009370.ALO_14007(PF06925)ER; (ER)
1009370.ALO_01554(PF13237)ER
1009370.ALO_19612(PF03600)ER
1009370.ALO_00255(PF12838)mitochondrial; (mitochondrial)
1009370.ALO_06045(PF03600)ER
1009370.ALO_17111(PF03600)ER
1009370.ALO_16712PF13332mitochondrial; (mitochondrial)
1009370.ALO_04031PF13332(ER); ER
1009370.ALO_01579(PF13857)(ER)
1009370.ALO_01205(PF06925)mitochondrial; ER
1009370.ALO_01749(PF00809)(mitochondrial)
1009370.ALO_12736(PF06725)ER
1009370.ALO_16412(PF03600)ER
1009370.ALO_10249(PF06725)ER
1009370.ALO_13409(PF01558) (PF01855) PF17147
1009370.ALO_03936(PF02906) (PF12838) (PF02256)
1009370.ALO_19737PF17147 (PF01855)
1009370.ALO_02451(PF01558)(ER)
1009370.ALO_14262(PF13237)(mitochondrial)
1009370.ALO_08370(PF12838)(mitochondrial)
1009370.ALO_17201PF00349 PF03727
1009370.ALO_02461PF17147 (PF01855)
1009370.ALO_05558PF13332(mitochondrial)
1009370.ALO_10094(PF09861)(mitochondrial)
1009370.ALO_17251PF17147 (PF01855)
1009370.ALO_02801(PF02421) (PF07670)
1009370.ALO_20902(PF02421) (PF07670)
1009370.ALO_12149(PF07670)(ER)
1009370.ALO_21766(PF13291)(ER)
1009370.ALO_06448(PF14413) (PF04446)
1009370.ALO_03166(PF01558)(plastid)
1009370.ALO_00685(PF02971) (PF07837)
1009370.ALO_19427PF17147 (PF01855)
1009370.ALO_17116(PF03600)(ER)
1009370.ALO_07798PF17147 (PF01855)
1009370.ALO_21671(PF12838)(mitochondrial)
1009370.ALO_21676PF17147 (PF01855)
1009370.ALO_06333(PF02906) (PF02256)
1009370.ALO_16602(PF02421) (PF07670)
1009370.ALO_04903PF00349 PF03727
1009370.ALO_13139PF17147 (PF01855)
1009370.ALO_13134(PF12838)(mitochondrial)
1009370.ALO_13509(PF06968)
1009370.ALO_15487PF13332
1009370.ALO_15482PF13332
1009370.ALO_15137(PF00809)
1009370.ALO_04453(PF07670)
1009370.ALO_04458(PF02421)
1009370.ALO_09369(PF00809)
1009370.ALO_11729(PF09861)
1009370.ALO_11764(PF05683)
1009370.ALO_06298(PF06777)
1009370.ALO_06160(PF06968)
1009370.ALO_19742(PF12838)
1009370.ALO_17980(PF03483)
1009370.ALO_15452(PF03063)
1009370.ALO_20267PF13332
1009370.ALO_01524(PF14512)
1009370.ALO_06378(PF03063)
1009370.ALO_07808(PF01558)
1009370.ALO_07393(PF12838)
1009370.ALO_19237PF13332not used
1009370.ALO_11214(PF02906)
1009370.ALO_07813(PF12838)
1009370.ALO_15472PF13332
1009370.ALO_02466(PF12838)
1009370.ALO_14477(PF14512)
1009370.ALO_13992(PF00809)
1009370.ALO_03736(PF03169)
1009370.ALO_05950(PF06725)
1009370.ALO_11759(PF05681)
1009370.ALO_17751(PF12838)
1009370.ALO_06155(PF06968)
1009370.ALO_07738(PF02403)not used
1009370.ALO_12925PF13332not used
1009370.ALO_16467(PF03169)
1009370.ALO_15467PF13332not used
1009370.ALO_09709(PF13291)
1009370.ALO_13942(PF13597)
1009370.ALO_18225(PF03483)
1009370.ALO_05765(PF09861)
1009370.ALO_10144(PF13857)
1009370.ALO_01449(PF05683)
1009370.ALO_17256(PF12838)
1009370.ALO_16781PF13332not used
1009370.ALO_14412(PF13597)
1009370.ALO_12975(PF05683)
1009370.ALO_01454(PF05681)
1009370.ALO_21414(PF02906)
1009370.ALO_13149(PF01558)
1009370.ALO_17241(PF01558)
1009370.ALO_15242(PF00809)
1009370.ALO_02836(PF12838)
1009370.ALO_20597(PF01969)
1009370.ALO_04503(PF06725)
1009370.ALO_09079(PF06925)
1009370.ALO_06723(PF03169)
1009370.ALO_21424(PF02906)
1009370.ALO_21224(PF06968)
1009370.ALO_06933(PF03483)
1009370.ALO_05645(PF02906)
1009370.ALO_20142PF13332not used
1009370.ALO_21896(PF13291)
1009370.ALO_09589(PF09861)
1009370.ALO_04833(PF07670)
1009370.ALO_04838(PF07670)
1009370.ALO_12980(PF05681)
1009370.ALO_00330(PF05681)
1009370.ALO_00335(PF05683)
1009370.ALO_19437(PF01558)
1009370.ALO_16856(PF13246)
1009370.ALO_17071PF13332not used
1009370.ALO_07873(PF02906)
1009370.ALO_06683(PF16760)
1009370.ALO_05790(PF06968)
1009370.ALO_05488(PF13291)
1009370.ALO_13434(PF07670)
1009370.ALO_16717PF13332
1009370.ALO_15377PF13332not used
1009370.ALO_03146(PF12838)
1009370.ALO_21686(PF01558)
1009370.ALO_18100PF13332not used
1009370.ALO_06323(PF12838)
1009370.ALO_13429(PF07670)
1009370.ALO_05153(PF02403)
1009370.ALO_08330(PF01969)
1009370.ALO_19442(PF02933)
1009370.ALO_17136(PF03063)
1009370.ALO_06338(PF13237)
1009370.ALO_01414(PF03063)
1009370.ALO_08305PF13332not used
1009370.ALO_08233(PF13237)
1009370.ALO_10654(PF05681)
1009370.ALO_10659(PF05683)
1009370.ALO_01424(PF12838)
1009370.ALO_06348(PF00809)
1009370.ALO_19727(PF01558)
1009370.ALO_17965(PF03483)
1009370.ALO_15017(PF09861)
1009370.ALO_03931(PF13237)
1009370.ALO_12281(PF13597)
1009370.ALO_08310PF13332not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================