Effective results for Sphingomonas sp. S17 (eggnog40)

Summary

Number of putative secreted proteins: 108
- Predicted by T4SEpre: 52
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 64 proteins (3 high, 61 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1007104.SUS17_1114+ER
1007104.SUS17_2490+ER
1007104.SUS17_2496(PF07971)ER; (ER)
1007104.SUS17_2498(PF16670)mitochondrial
1007104.SUS17_499+ER
1007104.SUS17_202+ER
1007104.SUS17_356(PF05433)mitochondrial; ER
1007104.SUS17_2024+(mitochondrial); mitochondrial
1007104.SUS17_754(PF05433)(ER)
1007104.SUS17_3084(PF01790)(ER)
1007104.SUS17_1550+ER
1007104.SUS17_2908(PF05433)(ER)
1007104.SUS17_2902(PF05433)ER
1007104.SUS17_2274+ER
1007104.SUS17_784(PF05433)ER
1007104.SUS17_1164+mitochondrial; (mitochondrial)
1007104.SUS17_1499+ER
1007104.SUS17_1380(PF05433)ER
1007104.SUS17_2040+mitochondrial; (mitochondrial)
1007104.SUS17_1530(PF16670)ER
1007104.SUS17_315(PF07971)ER
1007104.SUS17_3146+ER
1007104.SUS17_522+ER
1007104.SUS17_3289(PF06824)mitochondrial; (mitochondrial)
1007104.SUS17_3592+ER
1007104.SUS17_921(PF07971)mitochondrial
1007104.SUS17_851(PF06455)ER
1007104.SUS17_3297(PF07971)ER
1007104.SUS17_1189(PF03203)mitochondrial; (mitochondrial)
1007104.SUS17_3672+ER
1007104.SUS17_2737+ER
1007104.SUS17_139+mitochondrial; (mitochondrial)
1007104.SUS17_3922(PF04820)(ER)
1007104.SUS17_73+(mitochondrial); (plastid)
1007104.SUS17_388+ER
1007104.SUS17_2987(PF05433)ER
1007104.SUS17_2695+ER; (ER)
1007104.SUS17_3121(PF04041)(mitochondrial)
1007104.SUS17_2235(PF05433)ER
1007104.SUS17_2839(PF01790)ER
1007104.SUS17_2649+ER
1007104.SUS17_3554+(mitochondrial)
1007104.SUS17_1744(PF16387)(ER)
1007104.SUS17_1957(PF01790)(ER)
1007104.SUS17_2907(PF05433)plastid
1007104.SUS17_3288(PF07971)(ER)
1007104.SUS17_920(PF06824)(plastid)
1007104.SUS17_3295(PF07971)(mitochondrial)
1007104.SUS17_3231+(ER)
1007104.SUS17_3003(PF11911)(ER)
1007104.SUS17_3211(PF03203)(plastid)
1007104.SUS17_513(PF04041)
1007104.SUS17_3196(PF02796)
1007104.SUS17_1593+
1007104.SUS17_741+
1007104.SUS17_3734(PF02796)
1007104.SUS17_3427+
1007104.SUS17_251+
1007104.SUS17_3098(PF02796)
1007104.SUS17_1542(PF00028)
1007104.SUS17_244+
1007104.SUS17_3404+
1007104.SUS17_4073(PF02796)
1007104.SUS17_875+
1007104.SUS17_28+
1007104.SUS17_861+
1007104.SUS17_3145(PF04041)
1007104.SUS17_485(PF11911)
1007104.SUS17_3776(PF03203)
1007104.SUS17_2369(PF13668)
1007104.SUS17_587(PF04820)
1007104.SUS17_3290(PF07971)
1007104.SUS17_3906(PF02933)
1007104.SUS17_3586+
1007104.SUS17_1616(PF13668)
1007104.SUS17_938(PF04820)
1007104.SUS17_1984+
1007104.SUS17_2370(PF13668)
1007104.SUS17_440(PF04041)
1007104.SUS17_3112(PF02796)
1007104.SUS17_3629(PF04820)
1007104.SUS17_3244(PF04041)
1007104.SUS17_1263+
1007104.SUS17_541+
1007104.SUS17_544+
1007104.SUS17_3631(PF04820)
1007104.SUS17_3630(PF04820)
1007104.SUS17_1678+
1007104.SUS17_953+
1007104.SUS17_2996(PF01790)
1007104.SUS17_1646(PF04820)
1007104.SUS17_894(PF04820)
1007104.SUS17_2504(PF00028)
1007104.SUS17_3128PF03332
1007104.SUS17_3716PF03332
1007104.SUS17_3150+
1007104.SUS17_1782(PF04820)
1007104.SUS17_2204PF03332
1007104.SUS17_578(PF13668)
1007104.SUS17_579(PF13668)
1007104.SUS17_3461+
1007104.SUS17_1225(PF04820)
1007104.SUS17_985+
1007104.SUS17_2013+
1007104.SUS17_3074(PF02796)
1007104.SUS17_176(PF04820)
1007104.SUS17_3039+
1007104.SUS17_2311+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.8 (8/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================