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University of Vienna
Research network CMM
Dept of Microbiology and Ecosystem Science
CUBE
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SIMAP
Gepard
GenSkew
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PICA
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Eukaryotic like proteins
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Genome: Burkholderia cenocepacia PT15
Taxonomyid:
1167689
Class: s (p=pathogen;s=symbiont)
Domain:
PF13609
Copy number in non-pathogens:
Mean=1.65 Stddev=6.68
Proteins containing this domain:
accession
genenames
locustags
description
WP_006480960.1
porin
WP_011544494.1
porin
WP_011545139.1
porin
WP_011546370.1
porin
WP_011546404.1
porin
WP_011547110.1
porin
WP_011547374.1
porin
WP_011547814.1
porin
WP_011549134.1
porin
WP_011694681.1
porin
WP_011694745.1
porin
WP_011694874.1
porin
WP_012336737.1
porin
WP_012339412.1
porin
WP_012339426.1
porin
WP_012339490.1
porin
WP_023476835.1
porin
WP_023476884.1
porin
WP_027809996.1
porin
WP_027810002.1
porin
WP_027810073.1
porin
WP_027810103.1
porin, partial
WP_027810142.1
porin
WP_027810225.1
porin
WP_027810448.1
porin
WP_027810449.1
porin
WP_027810485.1
porin
WP_027810555.1
porin
WP_027810666.1
porin, partial
WP_027810869.1
porin
WP_027811256.1
porin
WP_027811332.1
porin
WP_027811345.1
porin
WP_027811591.1
porin
WP_027811597.1
porin
WP_027811705.1
porin
WP_027811714.1
porin
WP_027811851.1
porin
WP_027812121.1
porin
WP_027812184.1
porin
WP_027812458.1
porin
WP_027812475.1
porin, partial
WP_027812656.1
porin
WP_027812856.1
porin
WP_027812884.1
porin
WP_027813278.1
porin
WP_027813490.1
porin
Release announcements
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News
EffectiveDB genome mode fixed
24.11.20
EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31
20.08.17
EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29
24.06.16
Latest publications
EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
Prediction of microbial phenotypes based on comparative genomics.
Contact
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+43 1 4277 876681
contact.cube@univie.ac.at