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Genomes encoding eukaryotic-like proteins

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PF16483 Beta-1,3-glucanase

Copy number in non-pathogens:
Mean=0.13 Stddev=0.45

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 s 6 3
Kutzneria sp. 744 s 4 2
Streptomyces sp. PAMC 26508 s 6 3
Streptomyces sp. SirexAA-E s 4 2
Stigmatella aurantiaca DW4/3-1 s 4 2
Streptomyces sp. FxanaD5 s 4 2
Burkholderia gladioli 3848s-5 s 4 2
Streptomyces sp. TOR3209 s 4 2
Streptomyces sp. HGB0020 s 8 4
Burkholderia gladioli BSR3 s 4 2
Stigmatella aurantiaca DW4/3-1 s 4 2
Actinomadura madurae LIID-AJ290 s 4 2
Streptomyces brasiliensis s 4 2
Streptomyces sp. NRRL F-5555 s 4 2
Streptomyces sp. NRRL F-5527 s 4 2
Streptomyces sp. PgraA7 s 4 2
Luteibacter rhizovicinus DSM 16549 s 4 2
Lysobacter capsici s 4 2
Streptomyces griseus s 4 2
Lysobacter capsici s 4 2
Mycobacterium gordonae s 6 3
Mycobacterium gordonae s 4 2
Mycobacterium gordonae s 4 2
Streptomyces sp. SAT1 s 4 2
Mycobacterium gordonae s 4 2
Streptomyces pactum s 6 3
Mycobacterium intermedium s 4 2
Mycobacterium gordonae s 4 2
Mycobacterium intermedium s 4 2
Streptomyces cacaoi subsp. cacaoi s 4 2
Streptomyces rhizosphaericus s 4 2
Amycolatopsis kentuckyensis s 6 3
Amycolatopsis lexingtonensis s 6 3
Amycolatopsis pretoriensis s 6 3

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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