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Genomes encoding eukaryotic-like proteins

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PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease

Copy number in non-pathogens:
Mean=0.65 Stddev=0.84

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Rhizobium leguminosarum bv. trifolii WSM2297 s 5 5
Rhizobium leguminosarum bv. viciae 3841 s 7 7
Rhizobium leguminosarum bv. trifolii WSM1325 s 5 5
Burkholderia sp. BT03 s 5 5
Rhizobium leguminosarum bv. viciae 248 s 6 6
Rhizobium leguminosarum bv. phaseoli 4292 s 5 5
Rhizobium leguminosarum bv. viciae WSM1481 s 6 6
Rhizobium leguminosarum bv. trifolii SRDI943 s 5 5
Rhizobium mesoamericanum STM6155 s 5 5
Rhizobium leguminosarum bv. viciae Vc2 s 6 6
Rhizobium leucaenae USDA 9039 s 5 5
Cupriavidus sp. amp6 s 5 5
Rhizobium leguminosarum bv. viciae VF39 s 6 6
Rhizobium leguminosarum bv. phaseoli FA23 s 6 6
Burkholderia sp. JPY251 s 5 5
Rhizobium grahamii CCGE 502 s 5 5
Rhizobium sp. CIAT894 s 5 5
Rhizobium leguminosarum bv. trifolii CC278f s 5 5
Rhizobium leguminosarum bv. trifolii CC283b s 6 6
Rhizobium etli CFN 42 s 5 5
Rhizobium etli CIAT 652 s 5 5
Rhizobium leguminosarum bv. trifolii WSM1689 s 5 5
Rhizobium tropici s 5 5
Rhizobium phaseoli s 5 5
Inquilinus limosus s 5 5
Burkholderia sp. BT03 s 5 5

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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