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Genomes encoding eukaryotic-like proteins

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PF02150 RNA polymerases M/15 Kd subunit

Copy number in non-pathogens:
Mean=0.01 Stddev=0.11

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Paraliobacillus ryukyuensis s 9 1
Brevibacillus massiliensis s 9 1
Nosocomiicoccus massiliensis s 9 1
Gorillibacterium massiliense s 9 1
Bacillus andreraoultii s 9 1
Bacillus andreraoultii s 9 1
Bacillus andreraoultii s 9 1
Anaerococcus tetradius ATCC 35098 s 9 1
Anaerococcus prevotii DSM 20548 s 9 1
Eremococcus coleocola ACS-139-V-Col8 s 9 1
Anaerococcus prevotii ACS-065-V-Col13 s 9 1
Lactobacillus sucicola DSM 21376 = JCM 15457 s 9 1
Lactobacillus uvarum DSM 19971 s 9 1
Lactobacillus equi DPC 6820 s 9 1
Gemella bergeriae ATCC 700627 s 9 1
Paenibacillus sanguinis 2301083 = DSM 16941 s 9 1
Paenibacillus sp. oral taxon 786 str. D14 s 9 1
Sporolactobacillus laevolacticus DSM 442 s 9 1
Bacillus marmarensis DSM 21297 s 9 1
Sporolactobacillus terrae DSM 11697 s 9 1
Bacillus megaterium s 9 1
Terribacillus aidingensis s 9 1
Bacillus megaterium s 9 1
Anaerococcus tetradius s 9 1
Bacillus megaterium s 9 1
Bacillus megaterium s 9 1
Bacillus megaterium s 9 1
Clostridium cadaveris s 9 1
Bacillus megaterium s 9 1
Bacillus megaterium s 9 1
Bacillus megaterium s 9 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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