Metamenu

  • University of Vienna
  • Research network CMM
  • Dept of Microbiology and Ecosystem Science
  • CUBE
  • VOGDB
  • SIMAP
  • Gepard
  • GenSkew
  • ConsPred
  • PICA
effectors.org, University of Vienna

Search form

Navigation

  • Home
  • News
  • Browse
  • Job submission
  • Help
  • Methods
  • Download
  • Publications
  • Links

Genomes encoding eukaryotic-like proteins

  • CSV
  • XLS
  • XML

PF00350 Dynamin family

Copy number in non-pathogens:
Mean=0.63 Stddev=1.02

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Bacillus cereus s 4 5
Bacillus cereus s 4 5
Treponema phagedenis s 5 6
Campylobacter coli s 4 5
Campylobacter coli s 4 5
Campylobacter coli s 4 5
Campylobacter coli s 4 5
Campylobacter coli s 4 5
Bacillus cereus s 4 5
Campylobacter rectus RM3267 s 4 5
Escherichia coli DEC11D s 6 7
Bacillus cereus BGSC 6E1 s 4 5
Rivularia sp. PCC 7116 s 5 6
Clostridium saccharobutylicum DSM 13864 s 4 5
Calothrix sp. PCC 7103 s 6 7
Actinokineospora inagensis DSM 44258 s 4 5
Nostoc punctiforme PCC 73102 s 4 5
Clostridium saccharobutylicum DSM 13864 s 4 5
Campylobacter hominis ATCC BAA-381 s 4 5
Actinoplanes subtropicus s 4 5
Ruminococcus sp. HUN007 s 4 5
Myxosarcina sp. GI1 s 5 6
Pseudomonas aeruginosa s 4 5
Bacillus cereus s 4 5
Bacillus cereus s 4 5
Bacillus cereus s 4 5
Selenomonas sp. oral taxon 126 s 9 10
Bacillus thuringiensis s 4 5
Nostoc sp. KVJ20 s 7 8
Asanoa hainanensis s 4 5
Bacillus cereus s 4 5
Bacillus cereus s 4 5
Bacillus anthracis s 4 5
Paenibacillus odorifer s 4 5
Bacillus cereus s 4 5
Bacillus cereus s 4 5
Bacillus cereus s 4 5
Bacillus cereus s 7 8
Bacillus cereus s 7 8
Megamonas hypermegale s 5 6
Bacillus cereus s 4 5
Pseudomonas aeruginosa s 5 6

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

Contact

  • +43 1 4277 76681
  • +43 1 4277 876681
  • contact.cube@univie.ac.at
Computational Systems Biology, University of Vienna
  • Contact
  • Imprint
  • Privacy Policy
University Vienna