Effective results for Nevskia soli DSM 19509 (refseq)
Summary
Number of putative secreted proteins: 209
- Predicted by T4SEpre: 86
- Predicted by EffectiveELD: 31 eukaryotic-like domains, contained in 139 proteins (15 high, 124 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV, Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| WP_029923126.1 | + | (PF02544) | ER | ||
| WP_029919006.1 | (PF03176) | ER | |||
| WP_029922109.1 | (PF06966) | ER | |||
| WP_051749062.1 | + | ER | |||
| WP_051748462.1 | (PF10503) | mitochondrial | |||
| WP_029918813.1 | (PF01425) | ER | |||
| WP_029923241.1 | (PF11196) | ER | |||
| WP_051749517.1 | (PF01425) | ER; (mitochondrial) | |||
| WP_036516390.1 | (PF01425) | ER | |||
| WP_051748493.1 | + | ER | |||
| WP_029918570.1 | (PF03176) | (mitochondrial) | |||
| WP_051749232.1 | + | ER | |||
| WP_051749271.1 | + | (ER) | |||
| WP_036515744.1 | (PF01425) | ER | |||
| WP_036516783.1 | (PF03176) | (mitochondrial) | |||
| WP_051748835.1 | (PF01564) | ER | |||
| WP_029918553.1 | + | ER | |||
| WP_029920233.1 | (PF01425) | mitochondrial | |||
| WP_051748201.1 | (PF11196) | ER | |||
| WP_029919235.1 | (PF03176) | ER; (ER) | |||
| WP_029922492.1 | + | mitochondrial | |||
| WP_029923210.1 | + | ER | |||
| WP_051748396.1 | (PF14870) | mitochondrial | |||
| WP_029919384.1 | PF01607 | (mitochondrial) | |||
| WP_029921334.1 | + | ER | |||
| WP_029922642.1 | (PF01425) | ER | |||
| WP_051749491.1 | + | ER | |||
| WP_029923003.1 | + | ER | |||
| WP_051749188.1 | (PF10503) | ER | |||
| WP_029919869.1 | PF07343 | ER | |||
| WP_036517224.1 | (PF04185) | ER | |||
| WP_036516733.1 | (PF03176) | mitochondrial | |||
| WP_029920879.1 | + | ER | |||
| WP_051748739.1 | (PF01425) | mitochondrial; (mitochondrial) | |||
| WP_051748689.1 | + | ER | |||
| WP_029920889.1 | (PF06966) | ER | |||
| WP_051748920.1 | (PF03176) | mitochondrial | |||
| WP_029921901.1 | + | ER | |||
| WP_051749108.1 | (PF10503) | ER | |||
| WP_029920227.1 | (PF01425) | (ER) | |||
| WP_029922686.1 | (PF03176) | ER | |||
| WP_029920366.1 | + | ER | |||
| WP_051749233.1 | + | ER | |||
| WP_029920229.1 | (PF01425) | (mitochondrial) | |||
| WP_036516288.1 | + | ER; (ER) | |||
| WP_051749568.1 | (PF10503) | ER | |||
| WP_051749278.1 | PF09286 | ER | |||
| WP_029922990.1 | (PF04185) | mitochondrial | |||
| WP_051748921.1 | + | (mitochondrial); (plastid) | |||
| WP_029920855.1 | (PF04185) | (mitochondrial) | |||
| WP_051748189.1 | (PF05118) | (mitochondrial) | |||
| WP_029921004.1 | + | ER | |||
| WP_036516114.1 | + | ER | |||
| WP_051748648.1 | (PF03176) | ER | |||
| WP_029921695.1 | + | (ER) | |||
| WP_029922446.1 | (PF00150) | ER | |||
| WP_029923097.1 | PF09286 | ER | |||
| WP_029921857.1 | PF09286 | (mitochondrial) | |||
| WP_029922430.1 | + | mitochondrial | |||
| WP_029920832.1 | (PF03176) | mitochondrial | |||
| WP_051749384.1 | (PF10503) | ER | |||
| WP_029919529.1 | (PF01425) | ER | |||
| WP_051748241.1 | + | ER; (ER) | |||
| WP_029922354.1 | (PF04185) | (mitochondrial) | |||
| WP_029923113.1 | (PF11196) | ER | |||
| WP_029923287.1 | (PF04185) | ER | |||
| WP_029919571.1 | (PF03176) | ER | |||
| WP_029920218.1 | (PF01425) | ER | |||
| WP_029920464.1 | + | ER | |||
| WP_029923289.1 | (PF04185) | ER | |||
| WP_051749199.1 | (PF00150) | ER | |||
| WP_029919381.1 | + | ER | |||
| WP_051748703.1 | (PF01425) | (mitochondrial) | |||
| WP_029921405.1 | (PF00150) | (ER) | |||
| WP_029921439.1 | (PF14870) | (mitochondrial) | |||
| WP_051749494.1 | + | (ER) | |||
| WP_051748298.1 | + | ER | |||
| WP_051748135.1 | (PF14870) | ER; (ER) | |||
| WP_036517550.1 | PF02460 (PF03176) | (ER) | |||
| WP_029922742.1 | + | (ER) | |||
| WP_029922072.1 | + | plastid | |||
| WP_029921828.1 | (PF01968) (PF05378) | ||||
| WP_029920289.1 | (PF04734) (PF17048) | ||||
| WP_051749351.1 | PF09286 | (mitochondrial) | |||
| WP_051748466.1 | (PF02424) | (mitochondrial) | |||
| WP_051748860.1 | + | (mitochondrial) | |||
| WP_029920825.1 | (PF01968) (PF05378) | ||||
| WP_051748719.1 | PF09286 | (ER) | |||
| WP_051748701.1 | (PF01425) | (ER) | |||
| WP_051749120.1 | (PF01968) (PF05378) | ||||
| WP_029922007.1 | (PF04185) | (mitochondrial) | |||
| WP_029920540.1 | (PF00150) | plastid | |||
| WP_051748706.1 | + | (ER) | |||
| WP_029919594.1 | (PF03176) | (ER) | |||
| WP_029919421.1 | + | plastid | |||
| WP_051748869.1 | (PF10503) | (plastid) | |||
| WP_051748741.1 | (PF01425) | (plastid) | |||
| WP_029921398.1 | (PF01968) (PF05378) | ||||
| WP_029919104.1 | (PF04185) | (plastid) | |||
| WP_029922651.1 | (PF01425) | (ER) | |||
| WP_051748141.1 | PF09286 | plastid | |||
| WP_029918699.1 | + | (mitochondrial) | |||
| WP_051748893.1 | (PF01968) (PF05378) | ||||
| WP_029923092.1 | (PF10503) | (plastid) | |||
| WP_029921905.1 | (PF01968) (PF05378) | ||||
| WP_029921400.1 | (PF01968) (PF05378) | ||||
| WP_051749451.1 | PF02460 (PF03176) | ||||
| WP_036517454.1 | PF09286 | plastid | |||
| WP_029920216.1 | (PF01425) | (mitochondrial) | |||
| WP_029920232.1 | (PF01425) | (mitochondrial) | |||
| WP_029920290.1 | (PF02424) | (mitochondrial) | |||
| WP_051749287.1 | (PF12483) | (ER) | |||
| WP_051747953.1 | + | ||||
| WP_051749035.1 | + | ||||
| WP_029922981.1 | (PF02424) | ||||
| WP_029919940.1 | + | ||||
| WP_029921085.1 | (PF00150) | ||||
| WP_029922070.1 | (PF09537) | ||||
| WP_029921083.1 | (PF00150) | ||||
| WP_029921448.1 | + | ||||
| WP_029922053.1 | + | ||||
| WP_029922644.1 | + | ||||
| WP_051748933.1 | + | ||||
| WP_029922672.1 | + | ||||
| WP_051748410.1 | (PF10503) | ||||
| WP_051748412.1 | (PF05118) | ||||
| WP_029920053.1 | PF09286 | ||||
| WP_029919067.1 | (PF05118) | ||||
| WP_029920230.1 | (PF01425) | ||||
| WP_029921998.1 | + | ||||
| WP_051748476.1 | + | ||||
| WP_051749112.1 | (PF01564) | ||||
| WP_029920689.1 | + | ||||
| WP_029921417.1 | (PF01425) | ||||
| WP_029921280.1 | (PF00887) | ||||
| WP_051749454.1 | (PF14870) | ||||
| WP_029921202.1 | + | ||||
| WP_051748063.1 | + | ||||
| WP_029920215.1 | (PF01425) | ||||
| WP_036516879.1 | + | ||||
| WP_029919650.1 | + | ||||
| WP_029918541.1 | + | ||||
| WP_029923294.1 | + | ||||
| WP_051748190.1 | (PF05118) | ||||
| WP_036516173.1 | (PF10503) | ||||
| WP_051748672.1 | (PF04185) | ||||
| WP_029919826.1 | (PF11815) | ||||
| WP_051748203.1 | (PF02685) | ||||
| WP_051747986.1 | (PF04185) | ||||
| WP_029923457.1 | (PF04185) | ||||
| WP_029920999.1 | + | ||||
| WP_029922332.1 | (PF01192) | ||||
| WP_029918719.1 | (PF11539) | ||||
| WP_029919697.1 | + | ||||
| WP_051747926.1 | (PF00887) | ||||
| WP_029923206.1 | + | ||||
| WP_051749074.1 | (PF00150) | ||||
| WP_051749054.1 | (PF01564) | ||||
| WP_051749052.1 | (PF01564) | ||||
| WP_029922261.1 | PF00961 | ||||
| WP_036517969.1 | + | ||||
| WP_029919451.1 | + | ||||
| WP_029920448.1 | + | ||||
| WP_029921337.1 | (PF03176) | ||||
| WP_029923400.1 | (PF02685) | ||||
| WP_051749419.1 | (PF06966) | ||||
| WP_051749468.1 | (PF04185) | ||||
| WP_036515730.1 | (PF14870) | ||||
| WP_029921587.1 | (PF02424) | ||||
| WP_051748861.1 | (PF09537) | ||||
| WP_029919468.1 | PF09286 | ||||
| WP_051748590.1 | + | ||||
| WP_029919440.1 | (PF09537) | ||||
| WP_029921174.1 | + | ||||
| WP_029920882.1 | (PF01425) | ||||
| WP_029918962.1 | (PF03176) | ||||
| WP_029918654.1 | PF02041 | ||||
| WP_036517142.1 | (PF02424) | ||||
| WP_029921902.1 | (PF01564) | ||||
| WP_051749250.1 | (PF04185) | ||||
| WP_051749179.1 | + | ||||
| WP_029921459.1 | (PF14832) | ||||
| WP_029918784.1 | + | ||||
| WP_029921687.1 | (PF02685) | ||||
| WP_029918734.1 | (PF00368) | ||||
| WP_051749149.1 | (PF02424) | ||||
| WP_029919078.1 | + | ||||
| WP_051749053.1 | (PF01564) | ||||
| WP_036517512.1 | + | ||||
| WP_051749421.1 | (PF02685) | ||||
| WP_051749427.1 | + | ||||
| WP_029922383.1 | + | ||||
| WP_029919074.1 | (PF05118) | ||||
| WP_029922157.1 | (PF01192) | ||||
| WP_029922186.1 | + | ||||
| WP_029922767.1 | + | ||||
| WP_029922769.1 | + | ||||
| WP_029922184.1 | (PF04185) | ||||
| WP_029922915.1 | + | ||||
| WP_029922281.1 | (PF00368) | ||||
| WP_036517971.1 | (PF03176) | ||||
| WP_036517452.1 | (PF00150) | ||||
| WP_036516537.1 | + | ||||
| WP_051749169.1 | (PF04185) | ||||
| WP_029923201.1 | + | ||||
| WP_029919391.1 | (PF04734) | ||||
| WP_029918595.1 | + | ||||
| WP_036515785.1 | (PF11815) | ||||
| WP_029920742.1 | (PF01425) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.8 (8/10 KEGG proteins)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 1.0 (8/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=GENOTYPE
EMAIL=
==========================================================
Estimated copy number = 0.8 (8/10 KEGG proteins)
Estimated copy number = 1.0 (8/8 KEGG proteins)
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