Effective results for Streptococcus infantis X (eggnog40)

Summary

Number of putative secreted proteins: 98
- Predicted by T4SEpre: 89
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 25 proteins (5 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
997830.HMPREF1124_0712			+		ER
997830.HMPREF1124_0783			+		ER
997830.HMPREF1124_0015			+		ER
997830.HMPREF1124_0950			+		ER
997830.HMPREF1124_1977				PF02916	ER
997830.HMPREF1124_0566				PF04103	ER
997830.HMPREF1124_0619			+		ER
997830.HMPREF1124_1690			+		ER
997830.HMPREF1124_1697			+		ER
997830.HMPREF1124_1696			+		ER
997830.HMPREF1124_0978				PF03083	ER; (ER)
997830.HMPREF1124_1062			+		ER
997830.HMPREF1124_0112			+		ER
997830.HMPREF1124_0914			+		(ER); ER
997830.HMPREF1124_1521			+		mitochondrial
997830.HMPREF1124_1090			+		ER
997830.HMPREF1124_1094			+		ER
997830.HMPREF1124_1098			+		ER
997830.HMPREF1124_1252			+		(ER)
997830.HMPREF1124_1381				PF03083	ER
997830.HMPREF1124_0933				(PF04991)	(ER)
997830.HMPREF1124_1846				(PF05257)	ER
997830.HMPREF1124_0641				(PF03644)	(mitochondrial)
997830.HMPREF1124_1078			+		ER
997830.HMPREF1124_0661				(PF05257)	(ER)
997830.HMPREF1124_1621			+		mitochondrial
997830.HMPREF1124_0865				(PF05257)	ER
997830.HMPREF1124_0197			+		(mitochondrial)
997830.HMPREF1124_1927			+		ER
997830.HMPREF1124_1925			+		(mitochondrial); (plastid)
997830.HMPREF1124_0324				(PF06414)	(mitochondrial)
997830.HMPREF1124_0528			+		ER
997830.HMPREF1124_0839			+		ER
997830.HMPREF1124_1190			+		plastid
997830.HMPREF1124_1435			+	(PF03714)
997830.HMPREF1124_1854			+		(ER)
997830.HMPREF1124_1832			+		(mitochondrial)
997830.HMPREF1124_0999			+		(mitochondrial)
997830.HMPREF1124_0658				(PF03714)	(mitochondrial)
997830.HMPREF1124_0300			+
997830.HMPREF1124_0306			+
997830.HMPREF1124_0235			+
997830.HMPREF1124_1786			+
997830.HMPREF1124_1992			+
997830.HMPREF1124_1991			+
997830.HMPREF1124_0557			+
997830.HMPREF1124_0485			+
997830.HMPREF1124_0480				(PF05257)
997830.HMPREF1124_1205				(PF01018)	not used
997830.HMPREF1124_1684			+
997830.HMPREF1124_0804				(PF01351)
997830.HMPREF1124_0615				(PF05257)
997830.HMPREF1124_0580			+
997830.HMPREF1124_0543			+
997830.HMPREF1124_1016			+
997830.HMPREF1124_0378			+
997830.HMPREF1124_0117			+
997830.HMPREF1124_1351				(PF14311)
997830.HMPREF1124_1735			+
997830.HMPREF1124_0325				(PF06414)
997830.HMPREF1124_1724				PF03083
997830.HMPREF1124_0913			+
997830.HMPREF1124_1890			+
997830.HMPREF1124_1115			+
997830.HMPREF1124_0384			+
997830.HMPREF1124_0438			+
997830.HMPREF1124_0937				(PF04991)
997830.HMPREF1124_0936				(PF04991)
997830.HMPREF1124_0736			+
997830.HMPREF1124_0424			+
997830.HMPREF1124_1268			+
997830.HMPREF1124_0250			+
997830.HMPREF1124_0406			+
997830.HMPREF1124_0401			+
997830.HMPREF1124_0066			+
997830.HMPREF1124_0069			+
997830.HMPREF1124_1444			+
997830.HMPREF1124_1206				(PF01018)
997830.HMPREF1124_0478			+
997830.HMPREF1124_1057			+
997830.HMPREF1124_1050			+
997830.HMPREF1124_1930			+
997830.HMPREF1124_1801			+
997830.HMPREF1124_0468				(PF05257)
997830.HMPREF1124_0510			+
997830.HMPREF1124_0850			+
997830.HMPREF1124_1924			+
997830.HMPREF1124_1922			+
997830.HMPREF1124_1325				(PF01351)
997830.HMPREF1124_1326				(PF01351)
997830.HMPREF1124_0343			+
997830.HMPREF1124_0841			+
997830.HMPREF1124_1955			+
997830.HMPREF1124_0023			+
997830.HMPREF1124_0159			+
997830.HMPREF1124_1175			+
997830.HMPREF1124_0834			+
997830.HMPREF1124_0835			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================