Effective results for Staphylococcus argenteus (eggnog40)

Summary

Number of putative secreted proteins: 22
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 22 proteins (13 high, 9 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
985002.SAMSHR1132_24680				PF05257	ER
985002.SAMSHR1132_06110				PF05257	(mitochondrial)
985002.SAMSHR1132_24770				(PF00344)	(mitochondrial)
985002.SAMSHR1132_24160				(PF03306)	(ER)
985002.SAMSHR1132_02490				PF05257	ER
985002.SAMSHR1132_07000				PF05257	ER
985002.SAMSHR1132_23640				PF05257	ER
985002.SAMSHR1132_22020				(PF11070)	ER
985002.SAMSHR1132_08780				(PF09683)	ER
985002.SAMSHR1132_20560				(PF00344)	(mitochondrial)
985002.SAMSHR1132_04090				PF05257	(ER)
985002.SAMSHR1132_21280				PF05257	(mitochondrial)
985002.SAMSHR1132_17880				PF05257	(mitochondrial)
985002.SAMSHR1132_23820				PF05257	(ER)
985002.SAMSHR1132_10900				PF05257
985002.SAMSHR1132_06820				(PF05495)
985002.SAMSHR1132_15370				PF05257
985002.SAMSHR1132_21810				(PF10571)
985002.SAMSHR1132_21240				PF05257
985002.SAMSHR1132_22610				PF08771
985002.SAMSHR1132_19530				(PF03630)
985002.SAMSHR1132_20370				(PF03306)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================