Effective results for Dokdonia sp. 4H-3-7-5 (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 42 proteins (1 high, 41 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
983548.Krodi_0683				(PF06452)	ER
983548.Krodi_1622				(PF16313)	ER
983548.Krodi_0447				(PF10988)	ER
983548.Krodi_0058				(PF16313)	ER
983548.Krodi_2949				(PF16313)	ER
983548.Krodi_0822				(PF03321)	(mitochondrial); (plastid)
983548.Krodi_2578				(PF15902)	ER
983548.Krodi_2403				(PF14240)	ER
983548.Krodi_0142				(PF01823)	ER
983548.Krodi_1512				(PF15902)	ER
983548.Krodi_1161				(PF10988)	ER
983548.Krodi_1185				(PF03321)	(mitochondrial)
983548.Krodi_1522				(PF02128)	ER
983548.Krodi_2265				(PF06452)	ER
983548.Krodi_0639				(PF04784)	ER
983548.Krodi_2674				(PF06452)	ER
983548.Krodi_1040				(PF15902)	ER
983548.Krodi_1287				(PF15902)	ER
983548.Krodi_2399				(PF14240)	ER
983548.Krodi_0651				(PF04784)	ER
983548.Krodi_0274				(PF10988)	ER
983548.Krodi_0273				(PF10988)	ER
983548.Krodi_0640				(PF04784)	ER
983548.Krodi_0327				(PF00629)	ER
983548.Krodi_2693				(PF06452)	ER
983548.Krodi_1638				(PF01679)	ER; not used
983548.Krodi_1064				(PF02128) (PF00629)
983548.Krodi_0645				(PF01679)	ER; not used
983548.Krodi_2220				(PF01036)	(ER)
983548.Krodi_1358				(PF10504)
983548.Krodi_2331				(PF09537)
983548.Krodi_1568				PF07492
983548.Krodi_1751				(PF03321)
983548.Krodi_0917				(PF08695)
983548.Krodi_2869				(PF07766)
983548.Krodi_2712				(PF00036)
983548.Krodi_1291				(PF10013)	not used
983548.Krodi_0643				(PF10988)
983548.Krodi_0510				(PF01036)
983548.Krodi_2031				(PF09537)
983548.Krodi_2583				(PF10988)
983548.Krodi_0850				(PF09537)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================