Effective results for Microbacterium testaceum StLB037 (eggnog40)

Summary

Number of putative secreted proteins: 28
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 28 proteins (0 high, 28 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
979556.MTES_2618				(PF02727) (PF02728) (PF01179)	ER
979556.MTES_1035				(PF11790)	ER
979556.MTES_2085				(PF14587)	ER; (plastid)
979556.MTES_3328				(PF11790)	ER
979556.MTES_1673				(PF08531)	(mitochondrial)
979556.MTES_2698				(PF14587)	ER
979556.MTES_0658				(PF02727) (PF02728) (PF01179)
979556.MTES_2780				(PF14494)	ER
979556.MTES_1034				(PF08531)	(mitochondrial)
979556.MTES_2021				(PF16875) (PF16874)
979556.MTES_2077				(PF16875) (PF16874)
979556.MTES_2872				(PF16875) (PF16874)
979556.MTES_2440				(PF06032)
979556.MTES_2054				(PF05448)
979556.MTES_1042				(PF13204)
979556.MTES_2438				(PF06032)
979556.MTES_2439				(PF06032)
979556.MTES_1987				(PF08531)
979556.MTES_0043				(PF10013)
979556.MTES_1402				(PF09348)
979556.MTES_2031				(PF13204)
979556.MTES_2032				(PF08531)
979556.MTES_1347				(PF14721)
979556.MTES_0756				(PF13207)
979556.MTES_1117				(PF08531)
979556.MTES_1950				(PF05448)
979556.MTES_2053				(PF05448)
979556.MTES_3376				(PF09348)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================