Metamenu

Effective results for Granulicella tundricola (eggnog40)

Summary

Number of putative secreted proteins: 158
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 30 eukaryotic-like domains, contained in 158 proteins (64 high, 94 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
940615.AciX9_1840(PF16334) (PF16335) (PF17168) (PF08760)ER
940615.AciX9_1255(PF04389) (PF04253)ER
940615.AciX9_1522PF15780 (PF06739)ER
940615.AciX9_0211PF15780 (PF06739)ER
940615.AciX9_2155PF15780 (PF06739)ER
940615.AciX9_3722PF13620ER
940615.AciX9_3614PF13620ER
940615.AciX9_1144(PF04389)ER
940615.AciX9_3612(PF14534)ER
940615.AciX9_0386(PF13231)(ER); mitochondrial
940615.AciX9_0148PF13620ER
940615.AciX9_2899PF13620ER
940615.AciX9_0032(PF09752)mitochondrial
940615.AciX9_0036(PF03544)ER
940615.AciX9_0965(PF13231)ER
940615.AciX9_0817PF13620ER
940615.AciX9_0512(PF12849)ER
940615.AciX9_3738PF13620mitochondrial
940615.AciX9_3737PF13620mitochondrial
940615.AciX9_0048(PF01229)ER
940615.AciX9_0822(PF04389)ER
940615.AciX9_0732(PF03544)ER
940615.AciX9_1708(PF12849)ER
940615.AciX9_3387(PF13231)ER
940615.AciX9_3410PF13620ER
940615.AciX9_0612(PF09286)(mitochondrial); plastid
940615.AciX9_0613(PF16757)mitochondrial
940615.AciX9_2974(PF03544)ER
940615.AciX9_1225PF13620ER
940615.AciX9_2910PF13620ER
940615.AciX9_0060(PF13231)ER
940615.AciX9_3081PF05176ER
940615.AciX9_1721(PF13231)ER
940615.AciX9_1725(PF04389)ER
940615.AciX9_2296PF13620ER
940615.AciX9_0528(PF00295)ER
940615.AciX9_2740(PF14534)ER
940615.AciX9_0186PF13620(ER)
940615.AciX9_0188(PF09286)ER
940615.AciX9_3363(PF01229)ER
940615.AciX9_1211(PF00295)ER
940615.AciX9_1853PF13620ER
940615.AciX9_0510(PF12849)ER
940615.AciX9_3516(PF14534)ER
940615.AciX9_3517PF13620mitochondrial
940615.AciX9_1209PF13620mitochondrial
940615.AciX9_1842PF13620ER
940615.AciX9_0508(PF12849)ER
940615.AciX9_0504(PF12849)ER
940615.AciX9_0507(PF12849)ER; (ER)
940615.AciX9_1275PF13620ER
940615.AciX9_3745PF13620ER
940615.AciX9_3750PF15780ER
940615.AciX9_3751(PF04389)ER
940615.AciX9_1260(PF14534)ER
940615.AciX9_2809(PF13231)(ER)
940615.AciX9_1315PF13620ER
940615.AciX9_2928(PF00163)mitochondrial
940615.AciX9_2810PF14853ER
940615.AciX9_2310PF13620ER
940615.AciX9_0781(PF09286)ER
940615.AciX9_1242PF15780ER
940615.AciX9_0202(PF03544)ER
940615.AciX9_3244(PF04389)ER
940615.AciX9_3245PF13620ER
940615.AciX9_1881PF03265(ER)
940615.AciX9_3655PF13620ER
940615.AciX9_3306PF13620ER
940615.AciX9_0213PF13620(ER)
940615.AciX9_3270(PF04389)ER
940615.AciX9_3277(PF00295)ER
940615.AciX9_0180(PF09286)mitochondrial
940615.AciX9_0746PF01387(ER)
940615.AciX9_2731(PF12222)(mitochondrial); ER
940615.AciX9_0175PF13620ER
940615.AciX9_0177(PF01229)ER
940615.AciX9_0173(PF04389)ER
940615.AciX9_2212(PF03544)ER
940615.AciX9_1183(PF13231)(mitochondrial); (plastid)
940615.AciX9_1745(PF00295)mitochondrial; (mitochondrial)
940615.AciX9_1160PF13620ER
940615.AciX9_1366(PF09286)mitochondrial; plastid
940615.AciX9_2611(PF03544)ER
940615.AciX9_1126(PF00295)ER
940615.AciX9_0760PF13620ER
940615.AciX9_0370(PF04389)ER
940615.AciX9_3280PF13620ER
940615.AciX9_3287(PF04389)ER
940615.AciX9_0717PF13620ER
940615.AciX9_3656PF13620ER
940615.AciX9_2705(PF03544)ER
940615.AciX9_3616(PF04389)(plastid)
940615.AciX9_0966(PF13231)(ER)
940615.AciX9_2564(PF14534)(mitochondrial)
940615.AciX9_2294PF07400(mitochondrial)
940615.AciX9_3408(PF04389)(mitochondrial)
940615.AciX9_2826PF13620(ER)
940615.AciX9_1843PF13620(plastid)
940615.AciX9_2652PF13620(mitochondrial)
940615.AciX9_1907(PF07837) (PF02971)
940615.AciX9_1301(PF13231)(mitochondrial)
940615.AciX9_1655PF13620(mitochondrial)
940615.AciX9_2236(PF16757)ER
940615.AciX9_3438(PF05598)
940615.AciX9_2140(PF09286)
940615.AciX9_0709(PF05598)
940615.AciX9_3426PF13620
940615.AciX9_3135(PF05598)
940615.AciX9_3139(PF14534)
940615.AciX9_0738PF13620
940615.AciX9_2389(PF13231)
940615.AciX9_0607(PF09994)
940615.AciX9_1123PF13620
940615.AciX9_3093PF13620
940615.AciX9_1833PF13620
940615.AciX9_1486(PF03544)
940615.AciX9_1828PF13620
940615.AciX9_2024(PF05598)
940615.AciX9_2569(PF14534)
940615.AciX9_2297PF13620
940615.AciX9_2587(PF03544)
940615.AciX9_2748(PF03544)
940615.AciX9_0277(PF05598)
940615.AciX9_1456(PF05598)
940615.AciX9_0515(PF12849)
940615.AciX9_2820(PF13231)
940615.AciX9_1934PF13620
940615.AciX9_1930PF13620
940615.AciX9_2000(PF05598)
940615.AciX9_0506PF13620
940615.AciX9_0477(PF09994)
940615.AciX9_3525PF13620
940615.AciX9_2906(PF13231)
940615.AciX9_1877PF13620
940615.AciX9_0871PF13620
940615.AciX9_2249(PF05598)
940615.AciX9_2467(PF03544)
940615.AciX9_1313(PF09994)
940615.AciX9_0791(PF05598)
940615.AciX9_2492PF13620
940615.AciX9_0412(PF00163)
940615.AciX9_3784(PF10013)
940615.AciX9_0328(PF03544)
940615.AciX9_3658(PF05598)
940615.AciX9_2877PF13620
940615.AciX9_0103(PF05598)
940615.AciX9_3622(PF03544)
940615.AciX9_1507(PF05598)
940615.AciX9_0170PF13620
940615.AciX9_2436PF13620
940615.AciX9_1742PF13620
940615.AciX9_3290(PF03544)
940615.AciX9_0010(PF03544)
940615.AciX9_0011PF13620
940615.AciX9_2538(PF05598)
940615.AciX9_2086(PF05598)
940615.AciX9_0710(PF05598)
940615.AciX9_2701PF13620

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================