Metamenu

Effective results for Helicobacter felis ATCC 49179 (eggnog40)

Summary

Number of putative secreted proteins: 104
- Predicted by T4SEpre: 67
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 51 proteins (0 high, 51 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
936155.HFELIS_03010(PF02844) (PF02843)mitochondrial; (mitochondrial)
936155.HFELIS_01270(PF08238) (PF14938)ER
936155.HFELIS_06480(PF02844) (PF02843)(mitochondrial)
936155.HFELIS_10990(PF08238)ER
936155.HFELIS_11910+ER
936155.HFELIS_06190+ER
936155.HFELIS_05090+(ER)
936155.HFELIS_01080+ER
936155.HFELIS_01460+(ER)
936155.HFELIS_09660+ER
936155.HFELIS_00710+ER
936155.HFELIS_15410(PF08238)ER
936155.HFELIS_10550+ER
936155.HFELIS_02480(PF01535)ER
936155.HFELIS_13360(PF08238)ER
936155.HFELIS_06580+ER
936155.HFELIS_00670(PF08238)ER
936155.HFELIS_00680(PF08238)ER
936155.HFELIS_10100+(mitochondrial)
936155.HFELIS_08680(PF08238)ER
936155.HFELIS_05480(PF08238)ER
936155.HFELIS_10660+ER
936155.HFELIS_05460(PF08238)(ER)
936155.HFELIS_11840+ER
936155.HFELIS_16220(PF16565)(ER); (mitochondrial)
936155.HFELIS_15750(PF08238)ER
936155.HFELIS_05250(PF08238)(mitochondrial)
936155.HFELIS_16520(PF08238)(mitochondrial)
936155.HFELIS_15760(PF08238)ER
936155.HFELIS_14380+ER
936155.HFELIS_16380(PF08238)(mitochondrial)
936155.HFELIS_03440+ER
936155.HFELIS_08820+(ER)
936155.HFELIS_09680+ER
936155.HFELIS_07350+ER
936155.HFELIS_00900(PF08238)ER
936155.HFELIS_10750+(ER); ER
936155.HFELIS_03070+ER
936155.HFELIS_16640+(mitochondrial)
936155.HFELIS_15840(PF01051)(mitochondrial)
936155.HFELIS_09390+(mitochondrial)
936155.HFELIS_03280+(mitochondrial)
936155.HFELIS_11750+(PF01555)
936155.HFELIS_10020(PF03235)(plastid)
936155.HFELIS_12110+(plastid)
936155.HFELIS_01410+
936155.HFELIS_12850(PF01555)
936155.HFELIS_00600+
936155.HFELIS_12920(PF03235)
936155.HFELIS_07800+
936155.HFELIS_06940+
936155.HFELIS_16340(PF01755)
936155.HFELIS_11590+
936155.HFELIS_08620+
936155.HFELIS_08430+
936155.HFELIS_10680+
936155.HFELIS_16780(PF08238)not used
936155.HFELIS_16670+
936155.HFELIS_08930+
936155.HFELIS_06830(PF01555)
936155.HFELIS_05370+
936155.HFELIS_13780+
936155.HFELIS_16260(PF03235)
936155.HFELIS_15060+
936155.HFELIS_16680+
936155.HFELIS_12360+
936155.HFELIS_14930(PF11969)
936155.HFELIS_15530(PF01555)
936155.HFELIS_10040+
936155.HFELIS_04980+
936155.HFELIS_09850(PF01555)
936155.HFELIS_05960(PF01555)
936155.HFELIS_03990+
936155.HFELIS_16420(PF08238)
936155.HFELIS_03980+
936155.HFELIS_13340+
936155.HFELIS_16430+
936155.HFELIS_00200(PF01051)
936155.HFELIS_11530+
936155.HFELIS_09800(PF08238)
936155.HFELIS_16300(PF01051)
936155.HFELIS_16530(PF08238)
936155.HFELIS_16400(PF01051)
936155.HFELIS_01940(PF01755)
936155.HFELIS_15610+
936155.HFELIS_16140(PF01051)
936155.HFELIS_15470+
936155.HFELIS_00490+
936155.HFELIS_15970+
936155.HFELIS_16510(PF08238)
936155.HFELIS_11460(PF01755)
936155.HFELIS_12270(PF03235)
936155.HFELIS_09010+
936155.HFELIS_12280(PF03235)
936155.HFELIS_12860(PF01555)
936155.HFELIS_08000(PF01555)
936155.HFELIS_16370(PF08238)
936155.HFELIS_16620+
936155.HFELIS_07780(PF05686)
936155.HFELIS_06980+
936155.HFELIS_12870(PF02945)
936155.HFELIS_08100+
936155.HFELIS_11010(PF08238)
936155.HFELIS_16100(PF01051)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.5 (5/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.375 (3/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================