Effective results for Lactobacillus farciminis KCTC 3681 = DSM 20184 (eggnog40)

Summary

Number of putative secreted proteins: 45
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 45 proteins (1 high, 44 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
936140.LfarK3_010100011594				(PF02485)	(mitochondrial)
936140.LfarK3_010100009141				(PF01016)	(mitochondrial)
936140.LfarK3_010100009066				(PF03577)	mitochondrial; (plastid)
936140.LfarK3_010100002489				(PF00253)	(mitochondrial)
936140.LfarK3_010100004372				(PF16193) (PF12002)
936140.LfarK3_010100007466				(PF16193) (PF12002)
936140.LfarK3_010100008816				(PF16193) (PF12002)
936140.LfarK3_010100003492				(PF13127)
936140.LfarK3_010100011589				(PF02485)
936140.LfarK3_010100009650				(PF08282)
936140.LfarK3_010100009655				(PF08282)
936140.LfarK3_010100001337				(PF06838)
936140.LfarK3_010100005895				(PF01016)
936140.LfarK3_010100009405				(PF03577)
936140.LfarK3_010100006556				(PF08282)
936140.LfarK3_010100006394				PF02037
936140.LfarK3_010100001892				(PF00253)
936140.LfarK3_010100006496				(PF08282)
936140.LfarK3_010100002932				(PF08282)
936140.LfarK3_010100009465				(PF08282)
936140.LfarK3_010100009460				(PF08282)
936140.LfarK3_010100006851				(PF08282)
936140.LfarK3_010100006100				(PF01746)
936140.LfarK3_010100003512				(PF03577)
936140.LfarK3_010100000690				(PF08282)
936140.LfarK3_010100002699				(PF00253)
936140.LfarK3_010100009585				(PF08282)
936140.LfarK3_010100004237				(PF08282)
936140.LfarK3_010100008261				(PF08282)
936140.LfarK3_010100008996				(PF06100)
936140.LfarK3_010100006861				(PF08282)
936140.LfarK3_010100007781				(PF00165)
936140.LfarK3_010100012418				(PF03577)
936140.LfarK3_010100006095				(PF01746)
936140.LfarK3_010100006881				(PF08282)
936140.LfarK3_010100008306				(PF08282)
936140.LfarK3_010100008226				(PF08282)
936140.LfarK3_010100001167				(PF03577)
936140.LfarK3_010100009965				(PF08282)
936140.LfarK3_010100009830				(PF06100)
936140.LfarK3_010100012433				(PF03577)
936140.LfarK3_010100005850				(PF06838)
936140.LfarK3_010100008376				(PF08282)
936140.LfarK3_010100006866				(PF08282)	not used
936140.LfarK3_010100002614				(PF08282)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================