Effective results for Staphylococcus aureus subsp. aureus NCTC 8325 (eggnog40)

Summary

Number of putative secreted proteins: 25
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 25 proteins (15 high, 10 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
93061.SAOUHSC_02979				PF05257	ER
93061.SAOUHSC_02491				(PF00344)	(mitochondrial)
93061.SAOUHSC_02855				PF05257	ER
93061.SAOUHSC_00773				PF05257	ER
93061.SAOUHSC_02989				(PF00344)	(mitochondrial)
93061.SAOUHSC_00256				PF05257	ER
93061.SAOUHSC_02656				(PF11070)	ER
93061.SAOUHSC_02921				(PF03306)	ER
93061.SAOUHSC_02576				PF05257	(mitochondrial)
93061.SAOUHSC_00427				PF05257	(ER)
93061.SAOUHSC_02173				PF05257	(mitochondrial)
93061.SAOUHSC_02467				(PF03306)	(ER)
93061.SAOUHSC_02883				PF05257	(ER)
93061.SAOUHSC_00671				PF05257	(mitochondrial)
93061.SAOUHSC_01725				(PF03054)
93061.SAOUHSC_02571				PF05257
93061.SAOUHSC_02371				(PF03630)
93061.SAOUHSC_02393				PF02037
93061.SAOUHSC_01726				(PF03054)
93061.SAOUHSC_00375				(PF03054)
93061.SAOUHSC_02019				PF05257
93061.SAOUHSC_02023				PF05257
93061.SAOUHSC_00751				(PF05495)
93061.SAOUHSC_01219				PF05257
93061.SAOUHSC_01515				PF05257

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================