Effective results for Clostridium botulinum BKT015925 (eggnog40)

Summary

Number of putative secreted proteins: 56
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 56 proteins (0 high, 56 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
929506.CbC4_1079				(PF01477) (PF00882)	ER
929506.CbC4_0821				(PF00882)	mitochondrial
929506.CbC4_2317				(PF01633)	(mitochondrial)
929506.CbC4_0256				(PF00163)	mitochondrial
929506.CbC4_0043				(PF09818)	(mitochondrial)
929506.CbC4_1642				(PF16472)	ER
929506.CbC4_2037				(PF08367)	ER
929506.CbC4_0094				(PF14566)	ER
929506.CbC4_1626				(PF00163)	mitochondrial
929506.CbC4_0337				(PF01228) (PF02901)
929506.CbC4_1793				(PF01228) (PF02901)
929506.CbC4_1610				(PF01228) (PF02901)
929506.CbC4_2142				(PF01228) (PF02901)
929506.CbC4_1734				(PF01228) (PF02901)
929506.CbC4_0969				(PF05598)
929506.CbC4_0828				(PF01991)
929506.CbC4_1196				(PF01695)
929506.CbC4_0136				(PF02906)
929506.CbC4_1748				(PF01695)
929506.CbC4_1525				(PF02906)
929506.CbC4_0120				(PF05598)
929506.CbC4_1020				(PF01695)
929506.CbC4_2302				(PF01633)
929506.CbC4_2231				(PF05598)
929506.CbC4_0260				(PF09818)
929506.CbC4_1121				(PF01633)
929506.CbC4_0930				(PF05598)
929506.CbC4_0041				(PF01695)
929506.CbC4_0302				(PF05598)
929506.CbC4_0696				(PF05598)
929506.CbC4_2211				(PF02906)
929506.CbC4_1271				(PF05598)
929506.CbC4_1277				(PF01695)
929506.CbC4_1866				(PF05598)
929506.CbC4_0731				(PF16472)
929506.CbC4_0845				(PF08367)
929506.CbC4_2346				(PF07892)
929506.CbC4_1671				(PF05598)
929506.CbC4_2018				(PF12638)
929506.CbC4_2391				(PF05598)
929506.CbC4_0883				(PF01695)
929506.CbC4_0889				(PF02906)
929506.CbC4_2022				(PF05598)
929506.CbC4_2029				(PF05598)
929506.CbC4_2387				(PF12646)
929506.CbC4_0091				(PF05598)
929506.CbC4_2046				(PF01695)
929506.CbC4_1960				(PF02906)
929506.CbC4_0948				(PF05598)
929506.CbC4_0941				(PF01695)
929506.CbC4_1564				(PF05598)
929506.CbC4_2057				(PF05598)
929506.CbC4_2532				(PF07892)
929506.CbC4_0623				(PF16472)
929506.CbC4_1398				(PF01695)
929506.CbC4_0973				(PF05598)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================