Effective results for Streptococcus oralis Uo5 (eggnog40)

Summary

Number of putative secreted proteins: 99
- Predicted by T4SEpre: 100
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 21 proteins (2 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
927666.SOR_1203			+		ER
927666.SOR_1313			+		ER
927666.SOR_0893			+		mitochondrial
927666.SOR_0535			+		(mitochondrial); (plastid)
927666.SOR_1758				(PF00344)	mitochondrial
927666.SOR_1113			+		ER
927666.SOR_0510			+		mitochondrial; (mitochondrial)
927666.SOR_0511			+		ER
927666.SOR_0358				(PF03644)	mitochondrial
927666.SOR_1175				(PF03840)	ER
927666.SOR_1928			+		ER
927666.SOR_1344			+		ER
927666.SOR_1580				(PF00344)	ER; (mitochondrial)
927666.SOR_1906			+		ER
927666.SOR_1167			+		ER
927666.SOR_0620			+		ER
927666.SOR_1395				(PF03083)	ER
927666.SOR_0760				(PF04991)	(ER)
927666.SOR_0763				(PF04991)	mitochondrial
927666.SOR_1964				(PF05257)	ER
927666.SOR_1700				PF04103	ER
927666.SOR_1499			+		ER
927666.SOR_1141			+		ER
927666.SOR_1572				(PF03840)	ER
927666.SOR_0013			+		ER
927666.SOR_1832			+		ER
927666.SOR_0954			+		ER
927666.SOR_0002			+		mitochondrial; (mitochondrial)
927666.SOR_1281			+		ER
927666.SOR_1661				PF02916	(mitochondrial)
927666.SOR_1069			+		(mitochondrial)
927666.SOR_1295			+		ER
927666.SOR_1854				(PF09683)	ER
927666.SOR_1676			+		ER
927666.SOR_1072			+		ER
927666.SOR_1076			+		ER
927666.SOR_1075			+		ER
927666.SOR_1641			+		ER
927666.SOR_1874			+		ER
927666.SOR_0537			+		ER
927666.SOR_0261			+		(mitochondrial)
927666.SOR_0068			+		(ER)
927666.SOR_1480				(PF05257)	(ER)
927666.SOR_0762				(PF04991)	(ER)
927666.SOR_1962			+	(PF05257)
927666.SOR_1722			+		(ER)
927666.SOR_1792			+
927666.SOR_1797			+
927666.SOR_0311			+
927666.SOR_0674			+
927666.SOR_1413			+
927666.SOR_0782			+
927666.SOR_1307			+
927666.SOR_1128				(PF05495)
927666.SOR_0665			+
927666.SOR_1429			+
927666.SOR_0248			+
927666.SOR_1209			+
927666.SOR_1759			+
927666.SOR_1753			+
927666.SOR_0330			+
927666.SOR_0506			+
927666.SOR_0347			+
927666.SOR_0514			+
927666.SOR_1597			+
927666.SOR_0187			+
927666.SOR_0977			+
927666.SOR_0626			+
927666.SOR_0194			+
927666.SOR_1377				(PF01633)
927666.SOR_0579			+
927666.SOR_1974			+
927666.SOR_0564			+
927666.SOR_1969			+
927666.SOR_0976			+
927666.SOR_0776			+
927666.SOR_1259			+
927666.SOR_1954			+
927666.SOR_0396			+
927666.SOR_1371			+
927666.SOR_0289			+
927666.SOR_1809				(PF03083)
927666.SOR_1942				(PF05257)
927666.SOR_0877			+
927666.SOR_0955			+
927666.SOR_0485			+
927666.SOR_1991			+
927666.SOR_0851			+
927666.SOR_1198			+
927666.SOR_1250			+
927666.SOR_1268			+
927666.SOR_0585			+
927666.SOR_1296			+
927666.SOR_1183			+
927666.SOR_0218			+
927666.SOR_1622			+
927666.SOR_1654				(PF04991)
927666.SOR_1097				(PF01633)
927666.SOR_1254			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================