Metamenu

Effective results for Streptococcus pseudoporcinus SPIN 20026 (eggnog40)

Summary

Number of putative secreted proteins: 102
- Predicted by T4SEpre: 105
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 23 proteins (1 high, 22 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
910313.HMPREF9320_0218+(mitochondrial)
910313.HMPREF9320_0073+mitochondrial; (mitochondrial)
910313.HMPREF9320_0863+(ER)
910313.HMPREF9320_0008(PF00344)mitochondrial
910313.HMPREF9320_0498(PF06280)ER
910313.HMPREF9320_0541+ER
910313.HMPREF9320_0279+ER
910313.HMPREF9320_1471+mitochondrial
910313.HMPREF9320_1274+ER
910313.HMPREF9320_1865+ER
910313.HMPREF9320_0238+ER
910313.HMPREF9320_0812+ER
910313.HMPREF9320_1386+ER
910313.HMPREF9320_1387+ER; (ER)
910313.HMPREF9320_0389(PF02361)ER; (ER)
910313.HMPREF9320_0625(PF05257)ER
910313.HMPREF9320_1803+(ER); ER
910313.HMPREF9320_0828+ER
910313.HMPREF9320_1937+ER
910313.HMPREF9320_2051(PF02361)ER
910313.HMPREF9320_1908+ER
910313.HMPREF9320_0835+ER
910313.HMPREF9320_0181+mitochondrial
910313.HMPREF9320_0169(PF02361)ER
910313.HMPREF9320_0134+ER
910313.HMPREF9320_0041(PF05257)ER
910313.HMPREF9320_0048(PF05257)ER
910313.HMPREF9320_0063+ER
910313.HMPREF9320_1850+(ER)
910313.HMPREF9320_1601(PF06280)(mitochondrial)
910313.HMPREF9320_0385+(plastid)
910313.HMPREF9320_0633+(mitochondrial)
910313.HMPREF9320_0885+(mitochondrial)
910313.HMPREF9320_0897(PF02971) (PF07837)
910313.HMPREF9320_0314+(mitochondrial)
910313.HMPREF9320_1738+(mitochondrial)
910313.HMPREF9320_1980+(mitochondrial)
910313.HMPREF9320_0325+
910313.HMPREF9320_1451+
910313.HMPREF9320_1625(PF02361)
910313.HMPREF9320_1997+
910313.HMPREF9320_0003+
910313.HMPREF9320_0678+
910313.HMPREF9320_0904+
910313.HMPREF9320_0495+
910313.HMPREF9320_1862+
910313.HMPREF9320_1949+
910313.HMPREF9320_1048+
910313.HMPREF9320_0249+
910313.HMPREF9320_0245(PF06280)
910313.HMPREF9320_2079+
910313.HMPREF9320_0395+
910313.HMPREF9320_1672+
910313.HMPREF9320_1670+
910313.HMPREF9320_0731(PF00344)
910313.HMPREF9320_0818+
910313.HMPREF9320_1920+
910313.HMPREF9320_1495+
910313.HMPREF9320_1663(PF05257)
910313.HMPREF9320_1717+not used
910313.HMPREF9320_0533+
910313.HMPREF9320_1487+
910313.HMPREF9320_2059+
910313.HMPREF9320_1657(PF05257)
910313.HMPREF9320_1726(PF05257)
910313.HMPREF9320_1126(PF02361)
910313.HMPREF9320_0027+
910313.HMPREF9320_1345+
910313.HMPREF9320_0294+
910313.HMPREF9320_0596PF02916
910313.HMPREF9320_0188+
910313.HMPREF9320_1363+
910313.HMPREF9320_0766+
910313.HMPREF9320_0162+
910313.HMPREF9320_0972+
910313.HMPREF9320_1022+
910313.HMPREF9320_1119+
910313.HMPREF9320_0083+
910313.HMPREF9320_0562+
910313.HMPREF9320_0097(PF02361)
910313.HMPREF9320_0145+
910313.HMPREF9320_1579+
910313.HMPREF9320_1572+
910313.HMPREF9320_1797+
910313.HMPREF9320_0313+
910313.HMPREF9320_0222+
910313.HMPREF9320_1318+
910313.HMPREF9320_1404+
910313.HMPREF9320_1409+
910313.HMPREF9320_0947(PF05495)
910313.HMPREF9320_0307+
910313.HMPREF9320_1326(PF03714)
910313.HMPREF9320_0445+
910313.HMPREF9320_1155+
910313.HMPREF9320_0333(PF02361)
910313.HMPREF9320_1085+
910313.HMPREF9320_1332+
910313.HMPREF9320_0114+not used
910313.HMPREF9320_1427+
910313.HMPREF9320_1424+
910313.HMPREF9320_1521+
910313.HMPREF9320_1857(PF03714)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================