Effective results for Streptococcus vestibularis F0396 (eggnog40)

Summary

Number of putative secreted proteins: 108
- Predicted by T4SEpre: 81
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 47 proteins (42 high, 5 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
904306.HMPREF9192_1716+PF01610(mitochondrial)
904306.HMPREF9192_1037(PF00163)(mitochondrial)
904306.HMPREF9192_1107+ER
904306.HMPREF9192_0169+mitochondrial; (mitochondrial)
904306.HMPREF9192_1370+ER
904306.HMPREF9192_1201+(mitochondrial)
904306.HMPREF9192_1976(PF00344)mitochondrial
904306.HMPREF9192_0662+ER
904306.HMPREF9192_1563+(ER)
904306.HMPREF9192_1175+ER
904306.HMPREF9192_1778+ER
904306.HMPREF9192_0958+mitochondrial
904306.HMPREF9192_1148+ER
904306.HMPREF9192_1146+ER
904306.HMPREF9192_1327+ER
904306.HMPREF9192_1081+ER
904306.HMPREF9192_1888+ER; (ER)
904306.HMPREF9192_1445PF01610(mitochondrial)
904306.HMPREF9192_1454+ER
904306.HMPREF9192_0493+ER
904306.HMPREF9192_1861+mitochondrial; (mitochondrial)
904306.HMPREF9192_0737PF01610(mitochondrial)
904306.HMPREF9192_1700(PF06176)(mitochondrial)
904306.HMPREF9192_1675PF02916ER
904306.HMPREF9192_1012(PF00344)ER
904306.HMPREF9192_0996+PF01610
904306.HMPREF9192_0609+(mitochondrial)
904306.HMPREF9192_0982PF01610mitochondrial; not used
904306.HMPREF9192_1898(PF00163)(mitochondrial)
904306.HMPREF9192_0702+(mitochondrial)
904306.HMPREF9192_1040+(mitochondrial)
904306.HMPREF9192_0738+PF01610
904306.HMPREF9192_1734+
904306.HMPREF9192_0994PF01610
904306.HMPREF9192_1910PF00910
904306.HMPREF9192_0528+
904306.HMPREF9192_0357+
904306.HMPREF9192_1943+
904306.HMPREF9192_1588PF01610
904306.HMPREF9192_1104+
904306.HMPREF9192_1367PF01610
904306.HMPREF9192_0183+
904306.HMPREF9192_0504PF01610
904306.HMPREF9192_0503PF01610
904306.HMPREF9192_0502PF01610
904306.HMPREF9192_0508+
904306.HMPREF9192_1112PF01610
904306.HMPREF9192_1111PF01610
904306.HMPREF9192_1202PF01610
904306.HMPREF9192_0403PF01610
904306.HMPREF9192_0794+
904306.HMPREF9192_1562+
904306.HMPREF9192_1162+
904306.HMPREF9192_1305+
904306.HMPREF9192_1768+
904306.HMPREF9192_0366+
904306.HMPREF9192_0146+
904306.HMPREF9192_1513+
904306.HMPREF9192_2006+
904306.HMPREF9192_1172+
904306.HMPREF9192_1790PF01610
904306.HMPREF9192_0428PF04103
904306.HMPREF9192_1957+
904306.HMPREF9192_1438+
904306.HMPREF9192_1899PF01610
904306.HMPREF9192_1552+
904306.HMPREF9192_0330+
904306.HMPREF9192_1885+
904306.HMPREF9192_0205+
904306.HMPREF9192_0062+
904306.HMPREF9192_0321+
904306.HMPREF9192_0920+
904306.HMPREF9192_1459+
904306.HMPREF9192_1981+
904306.HMPREF9192_1655+
904306.HMPREF9192_1192+
904306.HMPREF9192_1449+
904306.HMPREF9192_0266PF01610
904306.HMPREF9192_0265PF01610
904306.HMPREF9192_1842PF01610
904306.HMPREF9192_0866PF01610
904306.HMPREF9192_0002PF01610
904306.HMPREF9192_0001PF01610
904306.HMPREF9192_1999PF01610
904306.HMPREF9192_0481PF01610
904306.HMPREF9192_0061+
904306.HMPREF9192_1050+
904306.HMPREF9192_1274PF01610
904306.HMPREF9192_0677+
904306.HMPREF9192_0472PF01610
904306.HMPREF9192_0475PF01610
904306.HMPREF9192_0474PF01610
904306.HMPREF9192_0709PF01610
904306.HMPREF9192_0297+
904306.HMPREF9192_1602PF01610
904306.HMPREF9192_1863+
904306.HMPREF9192_1460PF01610
904306.HMPREF9192_0258+
904306.HMPREF9192_0252+
904306.HMPREF9192_0655+
904306.HMPREF9192_0653PF01610
904306.HMPREF9192_1498PF01610not used
904306.HMPREF9192_1928+
904306.HMPREF9192_1719+
904306.HMPREF9192_1661PF01610
904306.HMPREF9192_0372PF01610
904306.HMPREF9192_0976PF01610
904306.HMPREF9192_1136PF01610

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================