Effective results for Streptococcus vestibularis F0396 (eggnog40)
Summary
Number of putative secreted proteins: 108
- Predicted by T4SEpre: 81
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 47 proteins (42 high, 5 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
904306.HMPREF9192_1716 | + | PF01610 | (mitochondrial) | ||
904306.HMPREF9192_1037 | (PF00163) | (mitochondrial) | |||
904306.HMPREF9192_1107 | + | ER | |||
904306.HMPREF9192_0169 | + | mitochondrial; (mitochondrial) | |||
904306.HMPREF9192_1370 | + | ER | |||
904306.HMPREF9192_1201 | + | (mitochondrial) | |||
904306.HMPREF9192_1976 | (PF00344) | mitochondrial | |||
904306.HMPREF9192_0662 | + | ER | |||
904306.HMPREF9192_1563 | + | (ER) | |||
904306.HMPREF9192_1175 | + | ER | |||
904306.HMPREF9192_1778 | + | ER | |||
904306.HMPREF9192_0958 | + | mitochondrial | |||
904306.HMPREF9192_1148 | + | ER | |||
904306.HMPREF9192_1146 | + | ER | |||
904306.HMPREF9192_1327 | + | ER | |||
904306.HMPREF9192_1081 | + | ER | |||
904306.HMPREF9192_1888 | + | ER; (ER) | |||
904306.HMPREF9192_1445 | PF01610 | (mitochondrial) | |||
904306.HMPREF9192_1454 | + | ER | |||
904306.HMPREF9192_0493 | + | ER | |||
904306.HMPREF9192_1861 | + | mitochondrial; (mitochondrial) | |||
904306.HMPREF9192_0737 | PF01610 | (mitochondrial) | |||
904306.HMPREF9192_1700 | (PF06176) | (mitochondrial) | |||
904306.HMPREF9192_1675 | PF02916 | ER | |||
904306.HMPREF9192_1012 | (PF00344) | ER | |||
904306.HMPREF9192_0996 | + | PF01610 | |||
904306.HMPREF9192_0609 | + | (mitochondrial) | |||
904306.HMPREF9192_0982 | PF01610 | mitochondrial; not used | |||
904306.HMPREF9192_1898 | (PF00163) | (mitochondrial) | |||
904306.HMPREF9192_0702 | + | (mitochondrial) | |||
904306.HMPREF9192_1040 | + | (mitochondrial) | |||
904306.HMPREF9192_0738 | + | PF01610 | |||
904306.HMPREF9192_1734 | + | ||||
904306.HMPREF9192_0994 | PF01610 | ||||
904306.HMPREF9192_1910 | PF00910 | ||||
904306.HMPREF9192_0528 | + | ||||
904306.HMPREF9192_0357 | + | ||||
904306.HMPREF9192_1943 | + | ||||
904306.HMPREF9192_1588 | PF01610 | ||||
904306.HMPREF9192_1104 | + | ||||
904306.HMPREF9192_1367 | PF01610 | ||||
904306.HMPREF9192_0183 | + | ||||
904306.HMPREF9192_0504 | PF01610 | ||||
904306.HMPREF9192_0503 | PF01610 | ||||
904306.HMPREF9192_0502 | PF01610 | ||||
904306.HMPREF9192_0508 | + | ||||
904306.HMPREF9192_1112 | PF01610 | ||||
904306.HMPREF9192_1111 | PF01610 | ||||
904306.HMPREF9192_1202 | PF01610 | ||||
904306.HMPREF9192_0403 | PF01610 | ||||
904306.HMPREF9192_0794 | + | ||||
904306.HMPREF9192_1562 | + | ||||
904306.HMPREF9192_1162 | + | ||||
904306.HMPREF9192_1305 | + | ||||
904306.HMPREF9192_1768 | + | ||||
904306.HMPREF9192_0366 | + | ||||
904306.HMPREF9192_0146 | + | ||||
904306.HMPREF9192_1513 | + | ||||
904306.HMPREF9192_2006 | + | ||||
904306.HMPREF9192_1172 | + | ||||
904306.HMPREF9192_1790 | PF01610 | ||||
904306.HMPREF9192_0428 | PF04103 | ||||
904306.HMPREF9192_1957 | + | ||||
904306.HMPREF9192_1438 | + | ||||
904306.HMPREF9192_1899 | PF01610 | ||||
904306.HMPREF9192_1552 | + | ||||
904306.HMPREF9192_0330 | + | ||||
904306.HMPREF9192_1885 | + | ||||
904306.HMPREF9192_0205 | + | ||||
904306.HMPREF9192_0062 | + | ||||
904306.HMPREF9192_0321 | + | ||||
904306.HMPREF9192_0920 | + | ||||
904306.HMPREF9192_1459 | + | ||||
904306.HMPREF9192_1981 | + | ||||
904306.HMPREF9192_1655 | + | ||||
904306.HMPREF9192_1192 | + | ||||
904306.HMPREF9192_1449 | + | ||||
904306.HMPREF9192_0266 | PF01610 | ||||
904306.HMPREF9192_0265 | PF01610 | ||||
904306.HMPREF9192_1842 | PF01610 | ||||
904306.HMPREF9192_0866 | PF01610 | ||||
904306.HMPREF9192_0002 | PF01610 | ||||
904306.HMPREF9192_0001 | PF01610 | ||||
904306.HMPREF9192_1999 | PF01610 | ||||
904306.HMPREF9192_0481 | PF01610 | ||||
904306.HMPREF9192_0061 | + | ||||
904306.HMPREF9192_1050 | + | ||||
904306.HMPREF9192_1274 | PF01610 | ||||
904306.HMPREF9192_0677 | + | ||||
904306.HMPREF9192_0472 | PF01610 | ||||
904306.HMPREF9192_0475 | PF01610 | ||||
904306.HMPREF9192_0474 | PF01610 | ||||
904306.HMPREF9192_0709 | PF01610 | ||||
904306.HMPREF9192_0297 | + | ||||
904306.HMPREF9192_1602 | PF01610 | ||||
904306.HMPREF9192_1863 | + | ||||
904306.HMPREF9192_1460 | PF01610 | ||||
904306.HMPREF9192_0258 | + | ||||
904306.HMPREF9192_0252 | + | ||||
904306.HMPREF9192_0655 | + | ||||
904306.HMPREF9192_0653 | PF01610 | ||||
904306.HMPREF9192_1498 | PF01610 | not used | |||
904306.HMPREF9192_1928 | + | ||||
904306.HMPREF9192_1719 | + | ||||
904306.HMPREF9192_1661 | PF01610 | ||||
904306.HMPREF9192_0372 | PF01610 | ||||
904306.HMPREF9192_0976 | PF01610 | ||||
904306.HMPREF9192_1136 | PF01610 |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: NO (FDR = 0.5 %)
- Functional Type III secretion system: N.D.
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0 (0/0 KEGG proteins)
- Functional Type VI secretion system: N.D.
Individual results for each secretion system
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0 (0/0 KEGG proteins)