Effective results for Actinomyces sp. oral taxon 180 str. F0310 (eggnog40)

Summary

Number of putative secreted proteins: 16
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 16 proteins (7 high, 9 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
888052.HMPREF9006_1469PF06280ER
888052.HMPREF9006_1470PF06280ER
888052.HMPREF9006_1473PF06280ER
888052.HMPREF9006_1474PF06280ER
888052.HMPREF9006_0187(PF13367)ER
888052.HMPREF9006_1995PF06280ER
888052.HMPREF9006_1342(PF08662)not used
888052.HMPREF9006_1728(PF02475)
888052.HMPREF9006_0757PF07054
888052.HMPREF9006_0475(PF08354)
888052.HMPREF9006_0188(PF13367)
888052.HMPREF9006_0189(PF13367)
888052.HMPREF9006_0845(PF14021)
888052.HMPREF9006_0840(PF14021)
888052.HMPREF9006_1331(PF00648)
888052.HMPREF9006_1312PF00910

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================