Metamenu

Effective results for Desulfovibrio vulgaris str. Miyazaki F (eggnog40)

Summary

Number of putative secreted proteins: 540
- Predicted by EffectiveT3: 204 (high confidence), 196 (low confidence)
- Predicted by EffectiveCCBD: 10 within, 8 before, 26 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 125 proteins (3 high, 122 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
883.DvMF_0708(PF01326) (PF00391)mitochondrial
883.DvMF_0705(PF01326) (PF00391)(mitochondrial)
883.DvMF_0946(>)ER
883.DvMF_1990(PF01326) (PF00391)(mitochondrial)
883.DvMF_2339(PF01326) (PF00391)(mitochondrial)
883.DvMF_1858(PF13188) (PF08448)ER
883.DvMF_0616(PF13188) (PF08448)mitochondrial; (mitochondrial)
883.DvMF_1060(PF08448)ER
883.DvMF_2577(>)ER
883.DvMF_2779+(PF00158) (PF08448)
883.DvMF_2603(PF03601)ER
883.DvMF_1243(PF13188)ER
883.DvMF_1102(PF08448)ER
883.DvMF_3062+(ER)
883.DvMF_0707(PF00391)mitochondrial; (mitochondrial)
883.DvMF_1251(+)(PF13188)(mitochondrial); mitochondrial
883.DvMF_1718(<)ER
883.DvMF_2133(PF08448)ER
883.DvMF_1620+mitochondrial; (mitochondrial)
883.DvMF_1397(<)ER
883.DvMF_1622+(>)plastid
883.DvMF_0381(>)ER
883.DvMF_1034(>)ER
883.DvMF_0927(>)mitochondrial
883.DvMF_2094(PF08448)ER
883.DvMF_2092(PF03601)ER
883.DvMF_1372(PF08448)ER
883.DvMF_0563(PF08448)(ER)
883.DvMF_2697+ER; (ER)
883.DvMF_2189(PF08448)ER
883.DvMF_1982(PF13188)ER
883.DvMF_1089(PF08448)mitochondrial
883.DvMF_3020(PF00158)ER
883.DvMF_0213(PF08448)(ER)
883.DvMF_0211(PF13188)ER
883.DvMF_1222(PF13188)mitochondrial
883.DvMF_0783+(mitochondrial)
883.DvMF_2528(PF00158)(mitochondrial)
883.DvMF_2148++(PF08448)
883.DvMF_1893(PF02348)mitochondrial
883.DvMF_0376(>)ER
883.DvMF_0520(>)(ER)
883.DvMF_2785(PF08448)ER
883.DvMF_0531(>)ER
883.DvMF_0620+mitochondrial; (mitochondrial)
883.DvMF_2482(PF08448)ER
883.DvMF_2483(PF13188)ER
883.DvMF_1581+ER
883.DvMF_2963+(PF13188) (PF08448)
883.DvMF_1866(PF13500)mitochondrial
883.DvMF_1696PF01591(mitochondrial)
883.DvMF_1697+ER
883.DvMF_2564(PF08448)ER
883.DvMF_1900(PF02348)(mitochondrial)
883.DvMF_1907+(PF13188)
883.DvMF_0182+(plastid)
883.DvMF_2572+(PF00158)
883.DvMF_2772+(PF08448)
883.DvMF_1484+(plastid)
883.DvMF_1482+plastid
883.DvMF_1489(+)ER
883.DvMF_2541(PF13188) (PF08448)
883.DvMF_1103+plastid
883.DvMF_1106(>)(plastid)
883.DvMF_1075+plastid
883.DvMF_1255+(PF03601)
883.DvMF_0669(+)mitochondrial; plastid
883.DvMF_0846+(PF02516)
883.DvMF_3082(+)ER
883.DvMF_1530(PF13188) (PF08448)
883.DvMF_1113(+)ER
883.DvMF_1700+(PF08448)
883.DvMF_0014(PF01326) (PF00391)
883.DvMF_0398+(mitochondrial)
883.DvMF_2698(+)mitochondrial
883.DvMF_1617+plastid
883.DvMF_1502(+)(mitochondrial); plastid
883.DvMF_0038+plastid
883.DvMF_0244(>)(plastid)
883.DvMF_0242(PF13500)(plastid)
883.DvMF_1754+(mitochondrial)
883.DvMF_2877(PF00391)(plastid)
883.DvMF_2985(+)(mitochondrial)
883.DvMF_2272PF13513(mitochondrial)
883.DvMF_0764+(plastid)
883.DvMF_3055+(plastid)
883.DvMF_2187(PF01326) (PF00391)
883.DvMF_1987(PF01326) (PF00391)
883.DvMF_0350+plastid
883.DvMF_2467(+)(ER); ER
883.DvMF_0777(<)(mitochondrial)
883.DvMF_1083(+)mitochondrial; plastid
883.DvMF_1088+(PF08448)
883.DvMF_0574+plastid
883.DvMF_0824+(PF08448)
883.DvMF_3150+(plastid)
883.DvMF_2450+(ER)
883.DvMF_0786(>)plastid
883.DvMF_2032(+)(mitochondrial)
883.DvMF_1434+(plastid)
883.DvMF_1435+(plastid)
883.DvMF_2351+(ER)
883.DvMF_1894(PF03102)(mitochondrial)
883.DvMF_0796+(plastid)
883.DvMF_2537+(PF08448)
883.DvMF_2530(+)ER
883.DvMF_2153(PF00158) (PF08448)
883.DvMF_1933(PF00158) (PF08448)
883.DvMF_2512+
883.DvMF_0416(PF01326) (PF00391)
883.DvMF_3010+(PF00158)
883.DvMF_0631+(plastid)
883.DvMF_1458+(PF08448)
883.DvMF_2950(+)(>)plastid
883.DvMF_1213(PF00158)(ER)
883.DvMF_1130(+)mitochondrial
883.DvMF_1465(+)ER
883.DvMF_1462+(mitochondrial)
883.DvMF_1864(>)(PF13500)
883.DvMF_2101+(plastid)
883.DvMF_2109+(PF00158)
883.DvMF_1477+(PF08448)
883.DvMF_3189+
883.DvMF_2584(PF00391)
883.DvMF_2582(<)
883.DvMF_0985+
883.DvMF_2211+
883.DvMF_0056+
883.DvMF_0331(PF08448)
883.DvMF_0332(PF00158)
883.DvMF_1279(>)
883.DvMF_1062+
883.DvMF_1066+
883.DvMF_2573+
883.DvMF_2774+
883.DvMF_2773+
883.DvMF_2778(+)(PF08448)
883.DvMF_0600+
883.DvMF_2373(+)(PF08448)
883.DvMF_2371(PF02348)
883.DvMF_2018+
883.DvMF_2011+
883.DvMF_2601(PF00158)
883.DvMF_2596+
883.DvMF_2425(PF05932)
883.DvMF_2421+
883.DvMF_0991(PF13188)
883.DvMF_2904+
883.DvMF_1802+
883.DvMF_1804+
883.DvMF_1247+
883.DvMF_1245+
883.DvMF_1242+
883.DvMF_0187+
883.DvMF_1070+
883.DvMF_2748(PF00158)
883.DvMF_0670(PF00158)
883.DvMF_1495+
883.DvMF_1492+
883.DvMF_1493(PF00158)
883.DvMF_0700(PF00158)
883.DvMF_0851+
883.DvMF_2632+
883.DvMF_2631+
883.DvMF_2913+
883.DvMF_2910+
883.DvMF_1812+
883.DvMF_1817(>)
883.DvMF_1818+
883.DvMF_1883+
883.DvMF_1009(PF13500)
883.DvMF_2757+
883.DvMF_2136+
883.DvMF_1621+
883.DvMF_0715+
883.DvMF_3083(+)(PF13188)
883.DvMF_1398+
883.DvMF_1391+
883.DvMF_0064+
883.DvMF_0061(+)(ER)
883.DvMF_1821(PF05932)
883.DvMF_0270+
883.DvMF_0423+
883.DvMF_0382(>)
883.DvMF_0385+
883.DvMF_2727+
883.DvMF_0658(>)
883.DvMF_0870+
883.DvMF_1526+
883.DvMF_2934(PF02943)
883.DvMF_1839+
883.DvMF_1832(PF03102)
883.DvMF_1834(+)(PF02348)
883.DvMF_1836+
883.DvMF_2557+
883.DvMF_2731(PF08448)
883.DvMF_1730+
883.DvMF_2398+
883.DvMF_2399+
883.DvMF_0732(+)(<)
883.DvMF_2642+
883.DvMF_2640(PF08448)
883.DvMF_2644(PF00158)
883.DvMF_1152+
883.DvMF_1510(PF00158)
883.DvMF_1516(+)(>)
883.DvMF_1514+
883.DvMF_0864+
883.DvMF_0608(PF00158)
883.DvMF_0001+
883.DvMF_1286+
883.DvMF_2707(PF08448)
883.DvMF_2700PF03269
883.DvMF_2259+
883.DvMF_1729+
883.DvMF_1720+
883.DvMF_1562+
883.DvMF_2411(PF00158)
883.DvMF_1618+
883.DvMF_1619+
883.DvMF_1569(+)(plastid)
883.DvMF_2095(PF00158)
883.DvMF_0742+
883.DvMF_2679(PF00158)
883.DvMF_3072(PF00158)
883.DvMF_2075+
883.DvMF_1509+
883.DvMF_0929+
883.DvMF_0928(>)
883.DvMF_2253(>)
883.DvMF_0039+
883.DvMF_2880+
883.DvMF_1296+
883.DvMF_1292+
883.DvMF_0249+
883.DvMF_1347+
883.DvMF_1759+
883.DvMF_1191+
883.DvMF_2408+
883.DvMF_2405(PF05932)
883.DvMF_2400+
883.DvMF_2087(+)(plastid)
883.DvMF_2089(+)(mitochondrial)
883.DvMF_2665+
883.DvMF_3041+
883.DvMF_1401(+)(mitochondrial)
883.DvMF_1403+
883.DvMF_3137+
883.DvMF_0028+
883.DvMF_0029+
883.DvMF_0025+
883.DvMF_2874+
883.DvMF_2872+
883.DvMF_1993(PF00158)
883.DvMF_1991+
883.DvMF_1979+
883.DvMF_1374(PF13188)
883.DvMF_0589+
883.DvMF_0345+
883.DvMF_2079+
883.DvMF_0699(PF00158)
883.DvMF_1187+
883.DvMF_2471+
883.DvMF_2696(<)
883.DvMF_1567+
883.DvMF_0903+
883.DvMF_0904+
883.DvMF_3202+
883.DvMF_2992+
883.DvMF_2995+
883.DvMF_1360(PF00158)
883.DvMF_1363(PF03601)
883.DvMF_1776+
883.DvMF_0682(+)(mitochondrial)
883.DvMF_1175+
883.DvMF_2263(+)plastid
883.DvMF_3029+
883.DvMF_2682+
883.DvMF_2683+
883.DvMF_2517+
883.DvMF_2518(+)(mitochondrial)
883.DvMF_1556(PF13500)
883.DvMF_2198+
883.DvMF_1798(PF00158)
883.DvMF_0821+
883.DvMF_0823(PF00158)
883.DvMF_2388+
883.DvMF_0912+
883.DvMF_2317(+)plastid
883.DvMF_0171+
883.DvMF_0215(PF00158)
883.DvMF_0218+
883.DvMF_1312(>)
883.DvMF_1319+
883.DvMF_1638+
883.DvMF_1763(PF00158)
883.DvMF_1766(+)(PF00158)
883.DvMF_2453+
883.DvMF_0785+
883.DvMF_0782+
883.DvMF_1095+
883.DvMF_1544(PF08448)
883.DvMF_1780+
883.DvMF_2149(PF00158)
883.DvMF_1436+
883.DvMF_1430+
883.DvMF_3146+
883.DvMF_2843(PF00158)
883.DvMF_0451+
883.DvMF_1157(PF08448)
883.DvMF_2334+
883.DvMF_2200(PF00158)
883.DvMF_0559(+)(plastid)
883.DvMF_2536(PF00158)
883.DvMF_2158+
883.DvMF_3177+
883.DvMF_2340(PF00158)
883.DvMF_3170+
883.DvMF_2261(<)
883.DvMF_2262+
883.DvMF_2515+
883.DvMF_1845(PF03102)
883.DvMF_1844(PF02348)
883.DvMF_0300+
883.DvMF_2242(>)
883.DvMF_1141(PF08448)
883.DvMF_0521+
883.DvMF_2239+
883.DvMF_2238(PF05932)
883.DvMF_2548(PF08448)
883.DvMF_3012+
883.DvMF_3015+
883.DvMF_2789+
883.DvMF_2236+
883.DvMF_2169(+)(plastid)
883.DvMF_2496+
883.DvMF_3164+
883.DvMF_0940+
883.DvMF_2820(>)
883.DvMF_2954+
883.DvMF_1428+
883.DvMF_1859(PF00158)
883.DvMF_1324(PF00158)
883.DvMF_1420(+)(plastid)
883.DvMF_0312+
883.DvMF_1136+
883.DvMF_1682+
883.DvMF_1041+
883.DvMF_2550(PF08448)
883.DvMF_0625+
883.DvMF_2178(>)
883.DvMF_2487+
883.DvMF_1461(PF00158)
883.DvMF_1460(PF08448)
883.DvMF_3197(<)
883.DvMF_0885+
883.DvMF_0752+
883.DvMF_0756+
883.DvMF_0754+
883.DvMF_1912+
883.DvMF_2969+
883.DvMF_1865+
883.DvMF_1260(PF00158)
883.DvMF_1122+
883.DvMF_1127+
883.DvMF_0434+
883.DvMF_0439+
883.DvMF_1692(PF00158)
883.DvMF_1699+
883.DvMF_1057+
883.DvMF_1052+
883.DvMF_1051+
883.DvMF_0504+
883.DvMF_0367(+)(>)
883.DvMF_2561+not used
883.DvMF_2764(PF09825)
883.DvMF_0612+
883.DvMF_0611+
883.DvMF_0610+
883.DvMF_2610(+)
883.DvMF_2587(+)
883.DvMF_0988(+)
883.DvMF_2805(+)
883.DvMF_1904(+)
883.DvMF_1871(+)
883.DvMF_0337(+)
883.DvMF_0801(+)
883.DvMF_2379(+)
883.DvMF_1645(+)
883.DvMF_0999(+)
883.DvMF_2901(+)
883.DvMF_2900(+)
883.DvMF_0044(+)
883.DvMF_2265(+)
883.DvMF_0456(+)not used
883.DvMF_0294(+)
883.DvMF_1071(+)
883.DvMF_2291(+)
883.DvMF_2127(+)
883.DvMF_1497(+)
883.DvMF_1499(+)
883.DvMF_2918(+)
883.DvMF_2911(+)
883.DvMF_2444(+)
883.DvMF_2323(+)
883.DvMF_2322(+)
883.DvMF_1006(+)
883.DvMF_2759(+)
883.DvMF_2755(+)
883.DvMF_2289(+)
883.DvMF_2625(+)
883.DvMF_2626(+)
883.DvMF_2622(+)
883.DvMF_2922(+)
883.DvMF_2030(+)
883.DvMF_0279(+)
883.DvMF_1015(+)
883.DvMF_1170(+)
883.DvMF_0499(+)
883.DvMF_1635(+)
883.DvMF_2629(+)
883.DvMF_1524(+)
883.DvMF_0755(+)
883.DvMF_1837(+)
883.DvMF_0011(+)
883.DvMF_1069(+)
883.DvMF_0126(+)
883.DvMF_1327(+)
883.DvMF_0466(+)
883.DvMF_0260(+)
883.DvMF_1029(+)
883.DvMF_0740(+)
883.DvMF_0394(+)
883.DvMF_1609(+)
883.DvMF_0734(+)
883.DvMF_2646(+)
883.DvMF_2645(+)
883.DvMF_0868(+)
883.DvMF_3119(+)
883.DvMF_0138(+)
883.DvMF_0256(+)
883.DvMF_2419(+)
883.DvMF_2096+
883.DvMF_2674(+)
883.DvMF_1504(+)
883.DvMF_3105(+)
883.DvMF_2889(+)
883.DvMF_2881(+)
883.DvMF_0246(+)
883.DvMF_2225(+)
883.DvMF_2249(+)
883.DvMF_2083(+)
883.DvMF_2669(+)
883.DvMF_2661(+)
883.DvMF_2062(+)
883.DvMF_1575(+)
883.DvMF_1576(+)
883.DvMF_2875(+)
883.DvMF_0115(+)
883.DvMF_0118(+)
883.DvMF_1189(+)
883.DvMF_0695(+)
883.DvMF_3078(+)
883.DvMF_2055(+)
883.DvMF_2184(+)
883.DvMF_2525(+)
883.DvMF_2524(+)
883.DvMF_1962(+)
883.DvMF_0593(+)
883.DvMF_0597(+)
883.DvMF_1176(+)
883.DvMF_2460(+)
883.DvMF_0575(+)
883.DvMF_0570(+)
883.DvMF_1559(+)
883.DvMF_1553(+)
883.DvMF_1797(+)
883.DvMF_1425(+)
883.DvMF_0919(+)
883.DvMF_2850(+)
883.DvMF_2856(+)
883.DvMF_2424(+)
883.DvMF_1310(+)
883.DvMF_1760(+)
883.DvMF_1765(+)
883.DvMF_1168(+)
883.DvMF_2454(+)
883.DvMF_2328(+)
883.DvMF_2651(+)
883.DvMF_3039(+)
883.DvMF_2031(+)
883.DvMF_2037(+)
883.DvMF_0963(+)
883.DvMF_0966(+)
883.DvMF_1945(+)
883.DvMF_1086(+)
883.DvMF_2336(+)
883.DvMF_0795(+)
883.DvMF_0557(+)
883.DvMF_0553(+)
883.DvMF_2202(+)
883.DvMF_3006(+)
883.DvMF_2535(+)
883.DvMF_2028(+)
883.DvMF_2155(+)
883.DvMF_1445(+)
883.DvMF_2686(+)
883.DvMF_1936(+)
883.DvMF_1938(+)
883.DvMF_2949(+)
883.DvMF_0309(+)
883.DvMF_1202(+)
883.DvMF_1143(+)
883.DvMF_0410(+)
883.DvMF_0701(+)
883.DvMF_0636(+)
883.DvMF_0630(+)
883.DvMF_2942(+)
883.DvMF_1450(+)
883.DvMF_0894(+)
883.DvMF_2955(+)
883.DvMF_2959(+)
883.DvMF_1328(+)
883.DvMF_0314(+)
883.DvMF_0404(+)
883.DvMF_1596(+)
883.DvMF_2176(+)
883.DvMF_0751(+)
883.DvMF_2960(+)
883.DvMF_2964(+)
883.DvMF_2366(+)
883.DvMF_0327(+)
883.DvMF_0329(+)
883.DvMF_3044(+)
883.DvMF_1120(+)
883.DvMF_1121(+)
883.DvMF_0438(+)
883.DvMF_2019(+)
883.DvMF_2760(+)
883.DvMF_1585(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.2 (12/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================